Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00744 ATGCCTACGCCGGTTGCAGTAGCGACACAATGCCTAACGGCGGAGGCCGCAAAGGCACTCCACGACGCCGTATCGGTGGCCCGACGGCGCGGCCACGCCCAGACCACTTCACTGCACACTGTGTCCGCTATGCTCTCCCAGGCGTCCTCTACCTTGCGCGACGCATGCGCACGTGCCCGAAGCGCCGTCTTCTTGACGCGCCTCCAATTCAGAGCCCTCGAACTCTCCCTCAGCGTGTCACTCGACCGCGTGCCGTCAGACTCTTGCGTCGGAGACGATCCTCCGGTGTCGAACTCGCTCATGGCCGCTATCAAACGGTCGCAAGCCTCGCAGCGCCGCAAACCAGAGAGCTTCCACCTCCAGCAGCCTTGTTCCGTTAAGGTGGACCTGCAGCACCTGATCCTGTCCATCCTCGATGATCCCGCCGTGAGTCGCGTCTTCGCCGAAGCGGGTTTTCGGAGCTCCGAAATCAAACTCGCCATCATCCGTCCCCTCACCCGTCTCATGCACCAACAACCTCCCCTTCGCCGGAGCTTCCCCTTCCCTTTCTCCGCCGAGGACAACTACGATCTTCGGAGGATCGCGGAGGTGCTATCCCGGAAGAGAGGCAGAAATCCCATGCTTCTGGGTGCATGTGCACGTGATGCGCTGTGGAGTTTCGCGGAAGCAGTGGAGAGGCAAAACAGCGCCGTTTTACGGGAGTTGTGCAGTTTGCACGTGGCGCGCATTGGAAGAGAGGTTATGGAGTTTGCTAGCGGGAGCCGTGGAGAAGAGGATGTGCGTTTGAGGTTTGAAGAGATTGGAGATATGGTGGAGCAGCGCGTGGGGAAAGGTATAGTGGTGGATGTGGGAGAGTTGGAGGGTTTGGTGAATGAGAAAAATGGTTGGGGTGAGAGTGAGGCAGTTAGGTATGTTGTTGTAGGGCTAGGAAAGTTGTTGCAAATTTGTTATGGACGGTTATGGCTCATTGGTGCTGCCTCAAACTATGAAAGGTACATGAAATTTGTAGGAAGGTTTCCTTCTATAGAGAAGGATTGGGACTTGCAGCTTCTGCCAATTCTAACTGTTCGTTCTTCATTCTCTGCTCAATCATATCACACTCGCAGGTGTGAGCCAAGTATCGCTGCTTCAACTGTTGATCTATTCCTGCCTAACTTACCTCCACGATTGCACATTTCTGACTCAGGATCAGCAAAAGGATTAAATCTTAAGATAGAAGATGGTGTTGTGCTGAATACTAGTGAATCTGCAATGCATAAGAACTTGGACAAGAAGTGCCAGTATCTGCATAAAATATTCCCTGATTCAAATAACAGTCCAACAGTTATGGCGTTCCAATATTGTGACAAAAAAGGAAAAGATGCTCACAACCCCAGCAATAAACTTACGCACACATCATCAAGTGAATACAACAATATCAACTCAGAAGTGCCTGTTGGTAAGCAAATGATTTCCACGTCACAATCAAGCAGTTTTTTTGATATGGATTTCAATGCAGGGCATGAGAAGTATACTTCAACACTTTCACAGAAGTTCCAGAGAGTGGAATGTTTAGATTCAAGGGATCTAGGATCATGCAACATGTGCACTTCCATTGTCTGTGATGGAAGCCAGATGTCTCCAACTTCTGTGATTTCTGTAACCACAGATTTGGGATTAGGAATGTGCTCCTCTCCTACCAGCAATAAATCTAACAGACCTTCCAGTCAATTTGCAATTGAACATCCAAAGGAAACCTCAAGTTTATTTTCTTCAAAATTTAATGTTGCTGGTGGAAATATCTTGAAACGCCCATCTCAGCCATCAGCCTTCTTAAGTTTTGACTTTTGTAGACAGGTCGATGCAAGGAATCCCAAAATTCTTTTCGATGTCCTTACCAAGGAGGTTAGCTGGCAGGATGAAGCCATTAGTGTCATCAGCAAAACAATAGCTGGCAGCCATACAAAAAAGGTTGGTGCAAATCATAGGGGTGACGTGTGGATGAATTTTGTTGGACCTGATAGGAATGGTAAAAGGAAAATTGCTGTTACTCTAGCTAAGTTCTTGTATGGAAGCCGGGATAGCTCTATTTTTGTGGATCTAAGTTCTGAAGAAATGAAAGGATGCAATGTGAAATTCAGAGGAAAGACTACTCTTGATTTAATTGTGGGTGAATATTGCAAGAACCCCTTCTCTGTGGTCTTCCTAGAAAATGTAGACGAGGCTGATGTGTTAGTTCAAAATAGTTTGTCTCAAGCCATGAAAACTGGAAAGCTTACTGACTCACGTGGAAGAGAAGTGGGTGTAAACAATGCAATATTTGTGACTTCTTTCCCTGGTCACCAAGCAAGGGAACCTTCCTACTGTTCTGAGAGAATAGCTAAGGTAAAAGGGAGGCCTATCAAAATAACAGTTGAAGATGTGAGTGCAGACATCAAAAGCCAAAGTGTTACTGTTTCTGATGGATCAATAGATAACATTCCCAATCCAGTTTTAGCAAATAAACGAAACTTCCTTAACCACGATGAATTTCAGGATCAGCACTTAATCTCACACAAGGCTAAAAGACTACAAACAACACCGAATTGGCATTTAGATTTGAATCTTCCAGCTGAAGACAATGAACCTCAAGTTCAACAAATGAATAATGGAAACTTGGAACATGCATTAACTGAGATCCAAAACCTTTGGTTGCAAGATTTGTATGAACAGGTTGATGAAACAGTTGTTTTTAAGCCTTTTAATTTTGATGCACTTGCGGATAGAGTGGTGAATGTGATCACAAGTAGCTTCCACAAAATTATTGGATCTGAATGTTCCTTACAGATAGAATCAGAAGTCATGGACCAGTTGCTTGCAGCTGCATACGTATCAGATGGAGATAAGGACATAGAAAATTGGGTAGAACAAGTTCTATGTGGAGGATTTACAGAAGTACAGAGAAGGTACAACCTTACTGGTTGTTTTACGGTGAAACTTGCTACATGTCCGCATCAAGAATCAAATGTGTACCTTCCTCCAAGTATAACAATGGATTAA 3018 0.4546 MPTPVAVATQCLTAEAAKALHDAVSVARRRGHAQTTSLHTVSAMLSQASSTLRDACARARSAVFLTRLQFRALELSLSVSLDRVPSDSCVGDDPPVSNSLMAAIKRSQASQRRKPESFHLQQPCSVKVDLQHLILSILDDPAVSRVFAEAGFRSSEIKLAIIRPLTRLMHQQPPLRRSFPFPFSAEDNYDLRRIAEVLSRKRGRNPMLLGACARDALWSFAEAVERQNSAVLRELCSLHVARIGREVMEFASGSRGEEDVRLRFEEIGDMVEQRVGKGIVVDVGELEGLVNEKNGWGESEAVRYVVVGLGKLLQICYGRLWLIGAASNYERYMKFVGRFPSIEKDWDLQLLPILTVRSSFSAQSYHTRRCEPSIAASTVDLFLPNLPPRLHISDSGSAKGLNLKIEDGVVLNTSESAMHKNLDKKCQYLHKIFPDSNNSPTVMAFQYCDKKGKDAHNPSNKLTHTSSSEYNNINSEVPVGKQMISTSQSSSFFDMDFNAGHEKYTSTLSQKFQRVECLDSRDLGSCNMCTSIVCDGSQMSPTSVISVTTDLGLGMCSSPTSNKSNRPSSQFAIEHPKETSSLFSSKFNVAGGNILKRPSQPSAFLSFDFCRQVDARNPKILFDVLTKEVSWQDEAISVISKTIAGSHTKKVGANHRGDVWMNFVGPDRNGKRKIAVTLAKFLYGSRDSSIFVDLSSEEMKGCNVKFRGKTTLDLIVGEYCKNPFSVVFLENVDEADVLVQNSLSQAMKTGKLTDSRGREVGVNNAIFVTSFPGHQAREPSYCSERIAKVKGRPIKITVEDVSADIKSQSVTVSDGSIDNIPNPVLANKRNFLNHDEFQDQHLISHKAKRLQTTPNWHLDLNLPAEDNEPQVQQMNNGNLEHALTEIQNLWLQDLYEQVDETVVFKPFNFDALADRVVNVITSSFHKIIGSECSLQIESEVMDQLLAAAYVSDGDKDIENWVEQVLCGGFTEVQRRYNLTGCFTVKLATCPHQESNVYLPPSITMD 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00744 1005 ProSiteProfiles Clp repeat (R) domain profile. 8 167 IPR004176 -
Phco3g00744 1005 Pfam Clp amino terminal domain, pathogenicity island component 128 161 IPR004176 -
Phco3g00744 1005 Pfam Clp amino terminal domain, pathogenicity island component 23 54 IPR004176 -
Phco3g00744 1005 SUPERFAMILY Double Clp-N motif 12 160 IPR036628 -
Phco3g00744 1005 Gene3D - 9 164 IPR036628 -
Phco3g00744 1005 CDD RecA-like_ClpB_Hsp104-like 619 770 - -
Phco3g00744 1005 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 974 - -
Phco3g00744 1005 Gene3D - 605 906 IPR027417 -
Phco3g00744 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 946 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00744 Phco-Chr3 6111234 6116520 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02781 2 57260413 57265392 Phco3g00744 3 6111234 6116520 ECH
Phco6g00103 6 1032928 1036822 Phco3g00744 3 6111234 6116520 ECH
Phco11g01722 11 13475785 13481834 Phco3g00744 3 6111234 6116520 ECH
Phco3g00333 3 2359810 2365277 Phco3g00744 3 6111234 6116520 ECH
Phco3g00744 3 6111234 6116520 Phco3g00744 3 6111234 6116520 ECH
Phco2g02781 2 57260413 57265392 Phco3g00744 3 6111234 6116520 PCT