Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00333 ATGCCGACGCCGGTCAGCATAGCAAGGCAATGCTTGACGGACGAGGCGGCGCGTGCCCTAGACGAAGCGGTGGCAGTAGCGCGCCGCCGCTGCCACGCGCAGACGACGTCGCTCCACGCCGTCTTGGCCCTGCTTGCGCTGCCAACCTCCTCGCTGCGCGAGGCCTGCGGCCGCGCGCGCGGCGCAAGCGCCGCCAGGTTCTCCGGGGCGTACTCACCGCGGCTGCAGTTCCGCGCGTTGGAGCTCTCCGTAGGAGTGTCGCTGGACCGGCTTCCTTCGTCGAAGGGCGGCGGCGGCGGCGAGGAGGAGCCGCCGGTGTCGAACTCGCTCATGGCGGCCATCAAGCGGTCACAGGCGAACCAGCGGCGGCAGCCGGAGAGCTTCCACGCGTTCCAGCAGAGCCAGCACGGGGGAACGGCGTCGTTTCTGAAAGTTGAGATGAAGCACTTCGTTTTGTCAATCCTCGACGATCCAATCGTGAGTCGCGTTTTCGCAGAAGCAGGGTTTCGAAGCTGTGACATCAAACTCGCGCTGCTTCAACCGCCGCTTCCCCCGGTTCAGCACCGGTTCCCCAGGGCCCCTCCAGTTTTTCTCTGCAACCTCGAACCGGACCGGCCCGACGAAAATATTCGCAGGATCGCGGAGGTACTGTCAAGAAAGAGCAAGCGAAACCCTTTATTGATGGGTGTTTATGCAAAGAGTGCTCTGAGGGGTTTTGTTGAGATGGTTCAAAAAGGTCGAGGGGGTTCGGTTTTGAGTTCGGAGTTGAGGGTGGTTTGTTTGGAGAGGGAGATTGGGGAATTTTTGAAAAGGGGTGGGAGTGGGGAAGAGGTGGTGGGTGTGAAGTTGAAGGAGTTGGAGCAGCAATGCGAGGGTTATTCTGGTTCTGGGGTTGTTAGCTTCGGGGAGGTTGAGGTTTTTGTAGGGGAGGATGTGGATGTTGATGCTGTTAGGTTTGTTGTTTCGGGGCTAACGAGGTTGTTAAAGATTGGTGGCGAGAAGGTTTCGTTGCTGGGTGTGGCTGAAACCTCTCACGCTTATTCCAAGTTCTTGAGCTTGTTTCCTAATGTGGAAAACGATTGGGATCTTCATTTGCTCACTGTCACTTCCGCCACTCCTTCTATGGAAGGACTCTACTCTAAGTCCAGCTTGATGGGGTCTTTTGTTCCATTTGGTGGGTTTTTTTCTACACCTGAAATCAGAAGTCCCGTGAACTCCACAAATGGATCTTTTACCCGTTGTGACAAATGCAATGAAAAATGTGAACAAGAAGTTGCTGATATTCTGAAGGTAGGTCCTTCGTCTAGTAACTCAACAAGCTCACCCTGGTTACAAAAGGTTGTTAATGTGGACACGCATAGAGGCTCGGATGTCACAAAGACCAGTGAAGAAAATACAAGTTTGAATGATAAGATCTTGGGATTTCAAAACAAATGGAGTGATATTTGTCAGCGTCTTCATCACAAAAGCTCACTGCCTCACTTTGATATTTCTCTGACAAGGTCCCAAGCTCCAATACTTGAGACTTTACGTTTTGGTCCAGGTTTTAAGGAAAGCAGCTGTGAAGATCCATCACGCAGTGAATTCCAATATTCTACTCAAGTTTCTTACATGCCCAAAGGGTTGCATGTTACTTTTCCATTACCTTCTGATACAGTCAGTGTTCGTACTGTAACTGGTAATGATTCAAAAGTCTCAGAGACACTGCAAATTGATGGGAAGACCCCTAGGGTCGTCCCTTCTAGTGTGCATGACCACAGATCATCTTTATCCCATACACCTGTGACCACAGATTTAGGATTGGGAACGTTATATACATCAACCTCTCAGTATCCAGATACCCCAAAACTACAAGATCAAAGAAAGCATCTTCAGCAATTGTCAGACTCTATTTCAACTGATTGTGATGCTATTAATGAAAATACTTCACACCAAATTCCTAGATCATCTTGGTCTGGTTCAAATTTTGATGGGAAAATTGATTTAGCAGATTTCAAGTCTCTTAATCGACATCTCACTGAAATGGTTGGCTGGCAGGATGAAGCCACATGTGCTATCAGTCAAACTTTGTCCCTTTGTAAAGCTGGTTCAGGGAAAAGTAGAGGGTCACAAGGTAGAGCAGACATATGGTTGGCTTTCCTTGGACCAGATAGACTTGGCAAAAGGAAAATTGCTTCTGTTCTTGCAGAGATTATCTTTGGAAACGCTGAAAGCCTAATCTCTGTGGATCTGGGCTTCCAGGACAGCTTTTACCCATTGAACTCAGTTTTTGAATGCCAAAAATCACGTTGTTATGATGCGCTTAGGAGGAAGACAATTGTGGACTATATTGCTGGAGAGTTGAGTAAAAAACCCCATGCTGTTGTCTTTCTTGAAAACGTAGATAAAGCTGATTTTCTGGTGCAGACTAGTTTGTTGGAGGCAATAAGATCTGGCAAATATCCAGATTCGCATGGAAGGGCAATTAACATCAATAACACAATCTTTCTTGTGGCCTCAACTGTCTGTAAAGGTAGTGGTTGTTTGGTTTCAGATGAGTCTAAAATGTTTTCGGAGGAAAGAATCCTTGAAGCCAAAAGATGTCAAATGCAATTATTACTAGGACATGCTTCCGAGGATGCCAAAACAATTGGTAGCACAAATGTCAAGGTTGTACCTAGAAAAGGTTTTTCCAAATCATCATCTCTGAACAAAAGAAAGCAGGCTGATATTAGTGAGTCCAATAAGGGAACAACAAGCAAGATGCAGAGACAGGACAGCGAGACATCTCGATCCTATCTGGATCTGAACATGCCTGTGGAGGAGAGTGATGAGGGTGTCAATGACAATGACCAAGAAAGTGAATCCATAACAGAAAACACAGACACCTGGTTAAGTGACTTCTTTGATCAAATTGATGAGAAAGTGGTGTTTAAGCCATTCAACTTTGATAAGCTTGCTGAGCAAGTATTAAAAAGCATTGGCATACTATTTCAAAGGACATTCGGATCAGAGCTTCAGCTAGAAATTGATTATGAGGTAATGACACACATACTTGCAGCTGCTTGGTTATCAGACAAAAAAAATGCAGTGGAGAATTGGGTTGAAAATGTTCTTGGCAGATGCTTTGCCAAAGCTCAGCAGAAGTACCATTCTGTATCTCAATATGTTGTGAGACTGGTTAACTGTGAATCCATTTTTGTGGAAGAGCAAGCTCCTGGTGTATGCCTTCCAGCTAGAATTAACCTGGACTAA 3234 0.4672 MPTPVSIARQCLTDEAARALDEAVAVARRRCHAQTTSLHAVLALLALPTSSLREACGRARGASAARFSGAYSPRLQFRALELSVGVSLDRLPSSKGGGGGEEEPPVSNSLMAAIKRSQANQRRQPESFHAFQQSQHGGTASFLKVEMKHFVLSILDDPIVSRVFAEAGFRSCDIKLALLQPPLPPVQHRFPRAPPVFLCNLEPDRPDENIRRIAEVLSRKSKRNPLLMGVYAKSALRGFVEMVQKGRGGSVLSSELRVVCLEREIGEFLKRGGSGEEVVGVKLKELEQQCEGYSGSGVVSFGEVEVFVGEDVDVDAVRFVVSGLTRLLKIGGEKVSLLGVAETSHAYSKFLSLFPNVENDWDLHLLTVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPEIRSPVNSTNGSFTRCDKCNEKCEQEVADILKVGPSSSNSTSSPWLQKVVNVDTHRGSDVTKTSEENTSLNDKILGFQNKWSDICQRLHHKSSLPHFDISLTRSQAPILETLRFGPGFKESSCEDPSRSEFQYSTQVSYMPKGLHVTFPLPSDTVSVRTVTGNDSKVSETLQIDGKTPRVVPSSVHDHRSSLSHTPVTTDLGLGTLYTSTSQYPDTPKLQDQRKHLQQLSDSISTDCDAINENTSHQIPRSSWSGSNFDGKIDLADFKSLNRHLTEMVGWQDEATCAISQTLSLCKAGSGKSRGSQGRADIWLAFLGPDRLGKRKIASVLAEIIFGNAESLISVDLGFQDSFYPLNSVFECQKSRCYDALRRKTIVDYIAGELSKKPHAVVFLENVDKADFLVQTSLLEAIRSGKYPDSHGRAININNTIFLVASTVCKGSGCLVSDESKMFSEERILEAKRCQMQLLLGHASEDAKTIGSTNVKVVPRKGFSKSSSLNKRKQADISESNKGTTSKMQRQDSETSRSYLDLNMPVEESDEGVNDNDQESESITENTDTWLSDFFDQIDEKVVFKPFNFDKLAEQVLKSIGILFQRTFGSELQLEIDYEVMTHILAAAWLSDKKNAVENWVENVLGRCFAKAQQKYHSVSQYVVRLVNCESIFVEEQAPGVCLPARINLD 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00333 1077 Gene3D - 642 876 IPR027417 -
Phco3g00333 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 660 1015 IPR027417 -
Phco3g00333 1077 MobiDBLite consensus disorder prediction 574 593 - -
Phco3g00333 1077 ProSiteProfiles Clp repeat (R) domain profile. 8 185 IPR004176 -
Phco3g00333 1077 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1044 - -
Phco3g00333 1077 MobiDBLite consensus disorder prediction 935 949 - -
Phco3g00333 1077 Gene3D - 10 180 IPR036628 -
Phco3g00333 1077 MobiDBLite consensus disorder prediction 890 929 - -
Phco3g00333 1077 MobiDBLite consensus disorder prediction 890 951 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00333 Phco-Chr3 2359810 2365277 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00333 3 2359810 2365277 Phco3g00333 3 2359810 2365277 ECH
Phco3g00333 3 2359810 2365277 Phco2g02781 2 57260413 57265392 ECH
Phco3g00333 3 2359810 2365277 Phco3g00744 3 6111234 6116520 ECH
Phco11g01722 11 13475785 13481834 Phco3g00333 3 2359810 2365277 ECH
Phco2g02781 2 57260413 57265392 Phco3g00333 3 2359810 2365277 ECH
Phco6g00103 6 1032928 1036822 Phco3g00333 3 2359810 2365277 ECH
Phco11g01722 11 13475785 13481834 Phco3g00333 3 2359810 2365277 PCT