Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01722 ATGCCGACGCCGGTAAGCACCGCGAGGCAGTGTCTCACGGACGAGGCGGCGCGTGCGCTCGACGATGCCGTCACGGTTGCCCGCCGCCGCAGCCACGCCCAGACCACCTCCCTCCACGCCGTCTCTGCCCTCCTCTCGCTCCCCTCCGCAACGCTTCGCGACGCCTGCGCTCGCTGCCGGAGCTGCTCCTACTCCCCCCGTCTCCAGTTCCGCGCCCTCGAGCTCTCCGTCGGCGTCTCCCTCGACCGCCTCCCCACAACAAAAACTGCCGGCGGGTCGGACGGCGGTTCTGGCGACGAGGGTCCCCCTGTCTCGAACTCCCTCATGGCCGCCATAAAGCGCTCCCAGGCAAACCAGCGGCGCCACCCGGATAGCTTCCACCTTATGCAGATGATGCAGCAACAGCAGCATCAAACGACGTCGTTGCTGAAAGTCGAACTCAAGCACTTCATTCTCTCTATTCTCGACGACCCTATCGTGAGTCGCGTCTTCGGCGAAGCCGGTTTCAGAAGCTACGACATCAAGCTCGCGCTTCTTCAACCACCTCCACCTTCAAGAATCTTCTCGCGGTTAACCCCTCCGGTTTTCCTCTGCAACCTCGAACCGGTTCAGAAGACCGGTTCGCGGCTAGACGAGAATTGCCGCAGAATCGTGGAGGTGGTGACGAGGAAGAGCAAAAGGAACCCTCTTTTGATGGGGGTGTACGCGAAAACCGCTCTGAAGAGCTTCATCGAATGCGTAGAAACTCGTAAAGGTGGGGTCTTGCCCTGTGAGCTGAATGGGTTGAGTGTAGTTTCGGTGGAGAAGGAGATTGGGGAGTTCTTGAGGGAAGGTGGGAGCGGAGGGAAGATTTTCGAGGATGTGGGTCGTCTGGTGGAGCAGTGTTCTGGTGCTGGGGTTGTTGTGTGTTTTGGGGAGATTGAGCTTTTTGTTGGGGGGAATGAGGAGGGTGTTGGTTTTGTGATTTCGCAGTTGACGAGGTTGTTGGGTGTTCATCTTGGGAAGGTGTGGTTGGTGGGCGTGGCGGGAACCTCGGAGGCCTATTCTAAGTTCCTGAGGTTGTTCCCTACAGTGGACAAGGATTGGGATCTGCATCTCCTGACCATGACCTCTGCCACCCCTTTCATGGAAGGACTCTACCCCAAGTCCAGCTTGATGGGGTCCTTTGTGCCATTTGGTGGGTTCTTTTCTACACCTTCTGAGTTGAAAAATCCTGTTAGCTGTAGGAATGCATCATCTTTAACACGGTGTGAGACATGCAATGAAAAGTGTGAACAAGAAGTTGCTGATATTTTGAGGGTAGGCCCTGCTACTTCACCATCTGGTTACTCAACGAGCTTGCCTTGGTTACAAAAGGTCAATGTGGAGACAGATAGAGGATTGGATGTGGCAAAGACTAATGAAGAAAACTCAAGTTTGAATGGGAAGATCTTAGGATTGCAAAGGAAATGGAGTGATATTTGTCAACGTCTTCATCAAAACCGATCATTACCTGAGTTTGATATTTCTAAAACAAGGTTCCAAGTTCCTTGCCTTGAGGGGTTTCAATTTGGTCCAGGATGTAGTAGCAAAGGGCCACCCCATAGTGAAATTCAATATTCTAAAATTTCTTGCATGTCTATTGAGTCGCAAAATGCATTTCCATTTAAACAGATATTACCAGTTTCTGTACCTTTTGACACTGTTAGCATCACTGATGAAGCAGATCACATAGCAAAAGTTTCTAAGAGTGATATGCATAGTACTTGGGTTTCTCCTTCCCCTAAGGCCAATTTGAGCCTACTTGATCACACATCATCTTCATCCTTGACTCCTGTGACCACTGATTTGGGATTGGGAACTATATATAAATCAGCCACTCATGAGCCAGACACCCCAAAACTAAGTGATCACAAGAAGCATCTTCACAACTTGCCAGATTCCCTTTCAAGTGATTTTAATCCTAAGAATGAGTGTACTTCACACCAAATTGCTAGATCTTCTTCATGCTCGGGTCCAAATCTAGAAGGGAATTTTGAAACGGTAGATTTCAAGTCACTGTACCATCTTCTCACTGAAAAGGTTGGCTGGCAGGATGAGGCCATATATGCTATCAATCAAACTGTGTCGCGTTGTAGATCTGGTGCTGGAAAGCGTAGTAGTGGCTCACATGTTAGAGCAGACATATGGCTTGCATTCCTTGGACCTGATAGACTTGGGAAAAGAAAACTTGCTTCTGCACTTGCTGAGATTTTATTTGGAAACAAACAAAGCTTGATCACTGTGGATTTGGGCTCTCAAGACAAGTGTTACCCATCAAACTCGATTTTTGAATTCCAAGATTCATATTGTCATGATGTGCTTATGAGGAAGACAGTTGTGGACTATATTGCTTGGGAGTTGAGTAAAAAGCCACATTCAGTTGTCTTTATTGATAATGTAGATCAAGCAGATTTTGTAGTGCAGAATAGTTTGTTCCAAGCAATAAGAACAGGTAAATTCTCGTACTCGCATGGAAGGGAAATCAGCATCAACAATGCAATATTTATTGTAACCTCTAGTGGGTTTAAAGGCAGTGGCTCTTTGAAATTGGAGCAGGATCCTAAGATGTTCCAAGAGGAAAGAATCCTAGAAGCTAAAAGATGTCAAATGCAATTATCACTTGGACATTATTCCCAGGATGTCCCCAAAAGGAGTGGTTGCACTAATGTGAAGGTTGCTCAAAGAAAAGGGACCTCCAAAACAACAATACCGAATAAAAGAAAGCTAGTAGAAAGTGGTGATTCTGCAGAGAAAGCATCATGCAAGACACTGAAGCAAGGCATGGAGGCATCAAGGTCCTATCTGGATCTTAACATGCCTCTGGAGGAGGTTGAAGAAGACAACAATTACAATGACTACGAAAGTGAATCCATAGTTGAAAACTGTGGATCCTGGTTAAATGACTTGTGTGATCAAGTTGATGAAAAAGTTGTTTTTAAGCCATTCAATTTTGATTCTCTAGCTGAGCAAATAATAAAAAGCATTGACATACAATTTCAAAAGATGTTTGGGTCAGAATTTATGCTGGAAATTGAGTATGAGGTGATGACACAGATTCTTGCAGCTGCTTGGTTATCTGACAAGAAACAAGCATTGGAAGATTGGGTTGAACATGTTCTTTGCAGAAGCTTTGCTGAAGCTCAACAGAAGTACCACTTTGCACCAGAATGTGTGATGAAACTGGTTAACTGTGAAAGAATTTTTTTGGAAGATCAATCTCCAGGAGTATGCCTTCCAGCTAGAATTAACTTGAACTGA 3279 0.4642 MPTPVSTARQCLTDEAARALDDAVTVARRRSHAQTTSLHAVSALLSLPSATLRDACARCRSCSYSPRLQFRALELSVGVSLDRLPTTKTAGGSDGGSGDEGPPVSNSLMAAIKRSQANQRRHPDSFHLMQMMQQQQHQTTSLLKVELKHFILSILDDPIVSRVFGEAGFRSYDIKLALLQPPPPSRIFSRLTPPVFLCNLEPVQKTGSRLDENCRRIVEVVTRKSKRNPLLMGVYAKTALKSFIECVETRKGGVLPCELNGLSVVSVEKEIGEFLREGGSGGKIFEDVGRLVEQCSGAGVVVCFGEIELFVGGNEEGVGFVISQLTRLLGVHLGKVWLVGVAGTSEAYSKFLRLFPTVDKDWDLHLLTMTSATPFMEGLYPKSSLMGSFVPFGGFFSTPSELKNPVSCRNASSLTRCETCNEKCEQEVADILRVGPATSPSGYSTSLPWLQKVNVETDRGLDVAKTNEENSSLNGKILGLQRKWSDICQRLHQNRSLPEFDISKTRFQVPCLEGFQFGPGCSSKGPPHSEIQYSKISCMSIESQNAFPFKQILPVSVPFDTVSITDEADHIAKVSKSDMHSTWVSPSPKANLSLLDHTSSSSLTPVTTDLGLGTIYKSATHEPDTPKLSDHKKHLHNLPDSLSSDFNPKNECTSHQIARSSSCSGPNLEGNFETVDFKSLYHLLTEKVGWQDEAIYAINQTVSRCRSGAGKRSSGSHVRADIWLAFLGPDRLGKRKLASALAEILFGNKQSLITVDLGSQDKCYPSNSIFEFQDSYCHDVLMRKTVVDYIAWELSKKPHSVVFIDNVDQADFVVQNSLFQAIRTGKFSYSHGREISINNAIFIVTSSGFKGSGSLKLEQDPKMFQEERILEAKRCQMQLSLGHYSQDVPKRSGCTNVKVAQRKGTSKTTIPNKRKLVESGDSAEKASCKTLKQGMEASRSYLDLNMPLEEVEEDNNYNDYESESIVENCGSWLNDLCDQVDEKVVFKPFNFDSLAEQIIKSIDIQFQKMFGSEFMLEIEYEVMTQILAAAWLSDKKQALEDWVEHVLCRSFAEAQQKYHFAPECVMKLVNCERIFLEDQSPGVCLPARINLN 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01722 1092 Pfam AAA domain (Cdc48 subfamily) 724 847 IPR003959 GO:0005524|GO:0016887
Phco11g01722 1092 Gene3D - 10 180 IPR036628 -
Phco11g01722 1092 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1056 - -
Phco11g01722 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 673 848 IPR027417 -
Phco11g01722 1092 MobiDBLite consensus disorder prediction 84 106 - -
Phco11g01722 1092 ProSiteProfiles Clp repeat (R) domain profile. 8 184 IPR004176 -
Phco11g01722 1092 CDD RecA-like_ClpB_Hsp104-like 676 850 - -
Phco11g01722 1092 SUPERFAMILY Double Clp-N motif 12 133 IPR036628 -
Phco11g01722 1092 Gene3D - 657 885 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01722 Phco-Chr11 13475785 13481834 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01722 11 13475785 13481834 Phco11g01722 11 13475785 13481834 ECH
Phco11g01722 11 13475785 13481834 Phco2g02781 2 57260413 57265392 ECH
Phco11g01722 11 13475785 13481834 Phco3g00744 3 6111234 6116520 ECH
Phco11g01722 11 13475785 13481834 Phco3g00333 3 2359810 2365277 ECH
Phco2g02781 2 57260413 57265392 Phco11g01722 11 13475785 13481834 ECH
Phco6g00103 6 1032928 1036822 Phco11g01722 11 13475785 13481834 ECH
Phco11g01722 11 13475785 13481834 Phco3g00333 3 2359810 2365277 PCT