Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02781 ATGCCCACGCCCGTCGCAGCGGCGCGTCAATGCCTAACCGCCGACGCCGCTCGCGCCCTCGACGAGGCCGTCTCCGTCGCCCGCCGACGGGGCCACGCCCAGACCACCTCTCTCCACGCCGTCTCTGCCCTCCTCTCCCTCCCCTCCTCCTCTCTACTTCGCGACGCCTGCTCACGCGCCCGCAACTGCGCGTACTCCCCACGCCTGCAGTTCAAGGCTCTCGACCTCTGCCTCTCCGTCTCCCTCGACCGCGCGCCGTCGTCGCACAGCCACCTTTCTTCCGACCACGACCCCCCCGTCTCCAACTCCCTCATGGCTGCCATCAAACGCTCCCAGGCCAACCAGCGCCGCCACCCTGATAACTTCCACTTCTATCACCACCAACAAACTCACCATAACCTAAACATAAACCAAAACCAAAACCACCAACAACCCTTTTCTGTTTCTTCCGTTAAAGTAGAGCTTCAGCATTTGATTCTGTCAATCCTGGACGACCCTGTCGTAAGCCGAGTCTTCGCTGAAGCCGGTTTCCGGAGCTCCGACATCAAACTCGCCATCCTCCGCCCTCTGCGCCCTCGCGGCCCGCCGATTTTCCTCTGCAATTTATCCGAGCCGCCGCGGCGGTTTCCTTTCTTCTTCGGTGGGGATGAGGGTGGCGGCGAGAATTTCCGGCGAATCGGAGAGCTTCTGGTCAGGAGCCGGGGGCGAAACCCGCTGCTTCTTGGAGCGTGCGCCGGCGACGCTCTCCGAAGCTTTGTGGAGGCTGTGGAGAAGCGGAGGGAGGGGGTTTTGCCGGTGGAGTTGTCCGGGCTGAAGGTGGTTTGCATTGCGGAGGAGGTGGCTCGTGGGGACGTGGAGGGTGTGGGGAAGCGCGTAAGGGAGATTGGAAGCTTGGCGGAGCAGTGTGTGGGGCCTGGTGTTGTGGTGAGTTTCGGGGACTTGAAGGGTTTTGTGAGCGATGAAGAAGGTGGTGGTGAGGGTTTGAGGGGAGTGGTTGGGGAATTGGCGAAGCTGTTGCAGGTTCATTATGATAAGTTTTGGTTAATGGGTGCCGCTGCTAGTTATGAGAGTTACTTGAAATTCGTGGGGAAGTTTCCTTGCATAGAGAAAGAGTGGGATTTGCAGCTTCTGCCTATTACCTCTGTCAAGCCTTCTGAATCCTATCAACGCCCCAGGTCCAGCTTAATGGATTCATTTGTGCCATTTGGTGGCTTTTTTTCGTCACAGTCTGATTTGAAAGGTCCACAGAATGGATCGTTTTATTGTGTTCCAAACTGTCATCAGTGTGGTGAAAGGTGTGAACATGATGTCCCTGTTGCTTCTAAGGAAAGGTTTTCTCCTTCTTCTGCTGTCGATTCGCATCAATCTAGCTTGCCTCCGTGGTTACAGATTGCAGGATTTGGCGCATCAAAGGGATTGAATGTTAAGACCAAAGATAATGATGTTTTGCTCGATAGTAGTGAATCTGGGCCACTGCATAAGAACTTAGACAAGTTATCCCAGCACCTGCACCAGCGAGATACAAATACTTTTCAAACTGTTGTGGGGTTTCAGTGTGGTGCTGACAAGAAAAAGGAAGATGCTGACCATTGCAGCAGACAAATCACAGACAAATCACCTAGTGAATACATCACTGTCAACTCCAATGTATCTGTTGGCATGCAAATGATGCCTGTGTCACACTCAAGTAGTCCTTTTCCTGCAGTTTTCAAGCCAAAGCAGGAGAAATATACTTCAAAACTTGCTGAGATGTTTCAGAAAGTGGAAGATCACGAGTCAGGTGACCTAAGATCGTGCAACATGTCCAATTCAAGCGTGTGTGATGGAAGTCAAATGTCTCCCACATCTGTAACTTCTGTAACCACAGACCTCGGGTTAGGAATATGCTCTTCTCCTACCAGCAATAAGCTAAAAAAACCTACTATTCAGTATACAATGGAGCCTCCAAAGGAAATCCCAAGTCGGTTTTCTTCAAACTTCAATTTGGCTGATGGGAATATCTTAAAGCATCCATCGCAGTCTTCATCCTGCTTAAGTTTCGACTATTGTGGACAAGTCGATGCGAAAAATCCCAAGTTTCTTTTTGAAGCTCTTTCCAAGGAGGTAAGCTGGCAAGACGAAGCTTTACAGGCTGTCATCAAAACAATAGTTTGCAGCTCAACAAAAAGGGTTAAACACCGTGGAGAAAATCAGCCTGGAGACATCTGGATGAATTTTGTTGGACCTGATAGACTTGGTAAAAAGAAAATTGCCGTTTCTCTAGCCGAGTTATTGTATGGCAGCCGGGAAAGCTTTATTTTTGTGGATCTAAATTCTGAAGAAATGAAAGGATGCAATGTGAAATTCAGAGGGAAAACTACCCTTGATTTTATTGTAGGGGAGTGTTGCAATAAACCCTTGTCTGTGGTTTTCCTTGAAAATGTAGACAAGGCAGATATTCTAGCTCAAAAAAGTTTGTCTCAGGCAATCAAGACAGGAAAGATTACAGACTCGCATGGACGAGAAGTTAGTGTAAACAATACAGTGTTTGTTTTATCTTTCTCATATTACCAAAATAGTTGGATACCAACTGGGGAACCTTCCAACTATTCTGAGGAAAGAATACTGAAGGCAGAGGGGGGAGGTATCAAGCTACACGTTGAACATGTAATTGGAGACAACAGAAGCCAAAGCATAGGTGTCACTAACAATTCAATGGATGTCATGCCTAATCTAAATTTCCTAAACAAACGTAAGTTGATTGGTGACGATGAATTTCATGATCCAGATATTCTCTCTGATACAGCTAAAAGGGCACATACAGCATCAGGTTGGCAGTTAGATTTGAATCTCCCAGCCGAAGAGAATGAACAGAAACTAACAAATGAAGGAAACCCTAAACATGTCTCAACTGAGAACCGAAGCGTTTGGTTGCAAAATTTGTGTGATCTGGTTGATGAAACGGTTGTTTTTAAACCTTGTGATTTTGATGCACTTGCGGATAGATTGTTGAAAGTGATCAGAGGTAACTTCAACAAGATTCTTGGATCTGAGTGTGTATTACAGATCCAGACAGAAGTGATGGACCAATTGCTTACAGCTCAATATGTCTCGGACAGGGATTCGGAGGTGGAGAACTGGGTGGAGGAAGTTCTTTGTGGAGGATTCACAGAAATACAGAGAAGGTATAACCTCACATCTAGTTCTATTGTAAAACTTGCTAGGTATCCAGAACAAGCTCCTGGTGTACACCTTCCCCCAAGGATAATTTTAGATTGA 3258 0.477 MPTPVAAARQCLTADAARALDEAVSVARRRGHAQTTSLHAVSALLSLPSSSLLRDACSRARNCAYSPRLQFKALDLCLSVSLDRAPSSHSHLSSDHDPPVSNSLMAAIKRSQANQRRHPDNFHFYHHQQTHHNLNINQNQNHQQPFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSDIKLAILRPLRPRGPPIFLCNLSEPPRRFPFFFGGDEGGGENFRRIGELLVRSRGRNPLLLGACAGDALRSFVEAVEKRREGVLPVELSGLKVVCIAEEVARGDVEGVGKRVREIGSLAEQCVGPGVVVSFGDLKGFVSDEEGGGEGLRGVVGELAKLLQVHYDKFWLMGAAASYESYLKFVGKFPCIEKEWDLQLLPITSVKPSESYQRPRSSLMDSFVPFGGFFSSQSDLKGPQNGSFYCVPNCHQCGERCEHDVPVASKERFSPSSAVDSHQSSLPPWLQIAGFGASKGLNVKTKDNDVLLDSSESGPLHKNLDKLSQHLHQRDTNTFQTVVGFQCGADKKKEDADHCSRQITDKSPSEYITVNSNVSVGMQMMPVSHSSSPFPAVFKPKQEKYTSKLAEMFQKVEDHESGDLRSCNMSNSSVCDGSQMSPTSVTSVTTDLGLGICSSPTSNKLKKPTIQYTMEPPKEIPSRFSSNFNLADGNILKHPSQSSSCLSFDYCGQVDAKNPKFLFEALSKEVSWQDEALQAVIKTIVCSSTKRVKHRGENQPGDIWMNFVGPDRLGKKKIAVSLAELLYGSRESFIFVDLNSEEMKGCNVKFRGKTTLDFIVGECCNKPLSVVFLENVDKADILAQKSLSQAIKTGKITDSHGREVSVNNTVFVLSFSYYQNSWIPTGEPSNYSEERILKAEGGGIKLHVEHVIGDNRSQSIGVTNNSMDVMPNLNFLNKRKLIGDDEFHDPDILSDTAKRAHTASGWQLDLNLPAEENEQKLTNEGNPKHVSTENRSVWLQNLCDLVDETVVFKPCDFDALADRLLKVIRGNFNKILGSECVLQIQTEVMDQLLTAQYVSDRDSEVENWVEEVLCGGFTEIQRRYNLTSSSIVKLARYPEQAPGVHLPPRIILD 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02781 1085 Gene3D - 10 189 IPR036628 -
Phco2g02781 1085 ProSiteProfiles Clp repeat (R) domain profile. 8 195 IPR004176 -
Phco2g02781 1085 Pfam Clp amino terminal domain, pathogenicity island component 153 187 IPR004176 -
Phco2g02781 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 849 IPR027417 -
Phco2g02781 1085 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1058 - -
Phco2g02781 1085 Gene3D - 675 872 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02781 Phco-Chr2 57260413 57265392 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02781 2 57260413 57265392 Phco3g00744 3 6111234 6116520 ECH
Phco2g02781 2 57260413 57265392 Phco2g02781 2 57260413 57265392 ECH
Phco6g00103 6 1032928 1036822 Phco2g02781 2 57260413 57265392 ECH
Phco11g01722 11 13475785 13481834 Phco2g02781 2 57260413 57265392 ECH
Phco3g00333 3 2359810 2365277 Phco2g02781 2 57260413 57265392 ECH
Phco2g02781 2 57260413 57265392 Phco11g01722 11 13475785 13481834 ECH
Phco2g02781 2 57260413 57265392 Phco3g00333 3 2359810 2365277 ECH
Phco2g02781 2 57260413 57265392 Phco3g00744 3 6111234 6116520 PCT