Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01308 ATGACTTCCTCACTCACGTGTCAGACCCAATACTCCCTTCCTTTCAACGAAAATGACTCTCAAGAAATGCCCCTTTACCAAGTTCTCGCTCAGGCTGCTGCAAATTCCTCGGAAACAATAACATCGTCGTTATCTTCGGTGTCTCATGCTTCAACTGTTGCCGAAGCAGAAGCTTCGGTTTCGTACAGAGGGGTTCGGAGGAGGCCATGGGGGAAGTACGCGGCAGAGATAAGGGACTCCACCAGGAACGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCTCTGGCTTACGACCAGGCTGCGTTGGCCATGCGAGGCTCCAAGGCAGTGCTCAACTTCCCAGCTGAGATTGTTTGGCAATCGCTTCGGAAGATGGAGTATGGTTTTGACCAAGGGTGTTCCCCCGTTCTGGAGTTGAAAAAGAGACACTCCATAAATAGAAAATGGGAGAGGAATAAGCTGAAGAAGAATGTGCAGGAAGAAGAAGAAGAAGGTGTTTCGCAACATGTGATGGTGTTGGAGGACCTAGGCACAGAGTATTTGGAACATCTTCTTACTCTCTCCCAGGATATGAATGTTTCTTAG 600 0.4967 MTSSLTCQTQYSLPFNENDSQEMPLYQVLAQAAANSSETITSSLSSVSHASTVAEAEASVSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGSKAVLNFPAEIVWQSLRKMEYGFDQGCSPVLELKKRHSINRKWERNKLKKNVQEEEEEGVSQHVMVLEDLGTEYLEHLLTLSQDMNVS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01308 199 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
Phco11g01308 199 FunFam Ethylene-responsive transcription factor 2 60 121 - -
Phco11g01308 199 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Phco11g01308 199 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Phco11g01308 199 CDD AP2 62 120 IPR001471 GO:0003700|GO:0006355
Phco11g01308 199 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
Phco11g01308 199 PANTHER DNA-BINDING DOMAIN 27 191 IPR044808 GO:0003700|GO:0009873
Phco11g01308 199 Gene3D AP2/ERF domain 61 121 IPR036955 GO:0003700|GO:0006355
Phco11g01308 199 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Phco11g01308 199 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01308 Phco-Chr11 9836962 9837561 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco11g01308 AP2 1.8e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01308 11 9836962 9837561 Phco6g01740 6 21382162 21382791 ECH
Phco2g01847 2 49034961 49035527 Phco11g01308 11 9836962 9837561 ECH
Phco6g01046 6 10392764 10393399 Phco11g01308 11 9836962 9837561 ECH
Phco11g01308 11 9836962 9837561 Phco11g01308 11 9836962 9837561 ECH
Phco11g01308 11 9836962 9837561 Phco6g01043 6 10362704 10363342 PCT