Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01740 ATGGATATAGATTCCTCCTCCTTCTTCAACTCCCCCTCTTCCGATTTCTCATCCGAATCTTCCTCTCCGGAAGCCTTCTCCTGGGAGGGCTACCTCCCCTTCAACGAGAACGACCCGGAGGAGATGCTCCTCTACGGCATGATCACCGGAGCCACCACAGCCGAGCGCAGCGCCGACCGAGCGGGCTCTGAGGAGAGTGCGACGGCACAAAAGGAGAAGTCCTACCGCGGAGTGAGGCGGCGGCCGTGGGGGAAGTTTGCGGCTGAGATTAGGGACTCCACACGGCACGGGATGAGGGTGTGGCTTGGGACATTCGACAGCGCGGAAGCCGCGGCTTTGGCTTACGACCAAGCGGCGTTTTCCATGCGCGGCTCCGCCGCGATACTGAACTTCCCCGTTGATATCGTTAGAGAATCGCTTAGGGAGATGAACTACGCGGTGGATAGCAGTGAAGAAGGGTGCTCCCCTGTAGTCGCTCTCAAGAGGAAACACTCCTTGCGGAGAAAAATTGGTGTAAAGAAAAACAACAAACAGAGTACCGTAGACAATGCGGTCGTGTTTGAAGACCTTGGTCCTGACTACTTGGAACAGTTGTTGATGTCCTCTGATCATATTCCCTCCTCCTTCTGA 630 0.5587 MDIDSSSFFNSPSSDFSSESSSPEAFSWEGYLPFNENDPEEMLLYGMITGATTAERSADRAGSEESATAQKEKSYRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVDIVRESLREMNYAVDSSEEGCSPVVALKRKHSLRRKIGVKKNNKQSTVDNAVVFEDLGPDYLEQLLMSSDHIPSSF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01740 209 FunFam Ethylene-responsive transcription factor 2 73 133 - -
Phco6g01740 209 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Phco6g01740 209 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Phco6g01740 209 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Phco6g01740 209 PANTHER DNA-BINDING DOMAIN 29 200 IPR044808 GO:0003700|GO:0009873
Phco6g01740 209 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Phco6g01740 209 MobiDBLite consensus disorder prediction 58 76 - -
Phco6g01740 209 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
Phco6g01740 209 MobiDBLite consensus disorder prediction 55 76 - -
Phco6g01740 209 MobiDBLite consensus disorder prediction 1 33 - -
Phco6g01740 209 CDD AP2 73 134 IPR001471 GO:0003700|GO:0006355
Phco6g01740 209 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Phco6g01740 209 MobiDBLite consensus disorder prediction 1 25 - -
Phco6g01740 209 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01740 Phco-Chr6 21382162 21382791 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g01740 AP2 6.6e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01308 11 9836962 9837561 Phco6g01740 6 21382162 21382791 ECH
Phco2g01847 2 49034961 49035527 Phco6g01740 6 21382162 21382791 ECH
Phco6g01046 6 10392764 10393399 Phco6g01740 6 21382162 21382791 ECH
Phco6g01740 6 21382162 21382791 Phco6g01740 6 21382162 21382791 ECH