Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01046 ATGACTTCCCCTTTCATCCAGAACCAAGACTGGGACATCTCGCAGGAGCCCTCAGAAATTTTATTCAATTCTTTGCCAAGAAATGCTGTTCTTGATCCTATTCACGATTCTCTTTCCTTCGATATGGTTGATTTCTCCACGGCACAAGCACAAGGAAATCACAACCAATTGGTGGTGAGGACTGAAGAAGTGAATAATAAGGAGAGGTCGTACAAAGGTGTGAGGAAAAGGCCTTGGGGAAAATATGCAGCAGAGATCAGAGACACAACCAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAAGCTGCAGCCTTGGCTTATGATCAAGCTGCATTCTCCATGAGAGGCCATAATGCTGTGCTGAATTTTCCAGTGAAAAGGGTGAAAGAGTCTTTGCAGGAGATCCAATATAGCTGCTTCAGTGGTTCTTCTCCCGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAGTTGTCATCAAAAGCTAAAAAGTTTAAAGGGAAAGACACATCAGAGGATCCAACACAAAGTGTGGTGGTGTTAGAGGATTTGGGAGTTGACTATTTAGAACATCTTCTAAGCATATCCGATCAAAGTCAAAGCCCTAGCTGCTTCGACTAA 636 0.4434 MTSPFIQNQDWDISQEPSEILFNSLPRNAVLDPIHDSLSFDMVDFSTAQAQGNHNQLVVRTEEVNNKERSYKGVRKRPWGKYAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYSCFSGSSPALALKERHCIQRKLSSKAKKFKGKDTSEDPTQSVVVLEDLGVDYLEHLLSISDQSQSPSCFD 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01046 211 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Phco6g01046 211 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Phco6g01046 211 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
Phco6g01046 211 PANTHER DNA-BINDING DOMAIN 53 202 IPR044808 GO:0003700|GO:0009873
Phco6g01046 211 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Phco6g01046 211 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Phco6g01046 211 CDD AP2 71 129 IPR001471 GO:0003700|GO:0006355
Phco6g01046 211 Gene3D AP2/ERF domain 70 130 IPR036955 GO:0003700|GO:0006355
Phco6g01046 211 FunFam Ethylene-responsive transcription factor 2 69 130 - -
Phco6g01046 211 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01046 Phco-Chr6 10392764 10393399 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g01046 AP2 2.3e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01046 6 10392764 10393399 Phco11g01308 11 9836962 9837561 ECH
Phco6g01046 6 10392764 10393399 Phco6g01740 6 21382162 21382791 ECH
Phco6g01046 6 10392764 10393399 Phco6g01046 6 10392764 10393399 ECH
Phco2g01847 2 49034961 49035527 Phco6g01046 6 10392764 10393399 PCT