Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01043 ATGACTTCTCCTTTCTTTCAGAGCCCATATTGGGACATGATCATGGAGATGCAAGAGCCTTCAGAAATTTTGTTCCAATCATTGTCAACCAATGATGTTCTTGACCCTCTACACGATTCTCTTTCCTTCGACATGGTTGACTTCTCCACAGCACCAACAGAAGGAAACCACAAAGAGTCAAAGCAATTGGTGGTGGAGTCTGAAGAGCAGAATAGGGAAAGGTCATACATAGGTGTGAGGAAAAGGCCGTGGGGAAAATTTGCTGCAGAAATCCGAGACACAACCAGAAGGGGCACAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAAGCTGCTGCGTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTACTCAATTTTCCTGTCAAAAGGGTTAAAGAGTCTTTGCAAGAGATTCAATATAGCTGCTTCAATGGCTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCAAGCAAAAACACTTATCAAAAGCTAAAAAGTGTAAAGGGAAAGAGAAATCAAAGGCAAGTGTGGTGGTGTTAGAAGATTTGGGAGTTGACTACCTAGAGCAACTTCTAACCATATCAGATCAAAGTGAAAGCCCTAGCCACTTCAACTAA 639 0.4366 MTSPFFQSPYWDMIMEMQEPSEILFQSLSTNDVLDPLHDSLSFDMVDFSTAPTEGNHKESKQLVVESEEQNRERSYIGVRKRPWGKFAAEIRDTTRRGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYSCFNGSSPALALKERHCKQKHLSKAKKCKGKEKSKASVVVLEDLGVDYLEQLLTISDQSESPSHFN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01043 212 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Phco6g01043 212 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Phco6g01043 212 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Phco6g01043 212 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Phco6g01043 212 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Phco6g01043 212 PANTHER DNA-BINDING DOMAIN 57 203 IPR044808 GO:0003700|GO:0009873
Phco6g01043 212 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Phco6g01043 212 FunFam Ethylene-responsive transcription factor 2 74 135 - -
Phco6g01043 212 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Phco6g01043 212 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01043 Phco-Chr6 10362704 10363342 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g01043 AP2 3.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01043 6 10362704 10363342 Phco6g01043 6 10362704 10363342 ECH
Phco11g01308 11 9836962 9837561 Phco6g01043 6 10362704 10363342 PCT
Phco6g01043 6 10362704 10363342 Phco2g01846 2 49011219 49014827 PCT