Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01847 ATGAGTTCCCCTTTCTTTGAGGTTTCAGATTGGGGCACATTGATGGAGCCTTCTGATATTTTGTTTGAACCATTTTCAAGCAAAGATATTGGTTATGACCCTTTCCATGACTGTCTTTCCTTTGATATGATTGATCACTCAAGGGATCCACAGGAACCAAGTGAAGTGATTGAATCTATGGAAGTGGTGCAAAGTAAGAAGTGTGGTTATATTGGGGTAAGGAGAAGACCGTGGGGAAGATTTGCAGCGGAGATCAGAGACGCGACGAGGAAAGGTACGAGGGTTTGGCTTGGAACGTTTGGTAATGCTGAAGAAGCTGCTTTGGCTTATGATCAAGCTGCATTTGTGATGAGAGGATCAAGTGCAGTGCTGAATTTTCCTGTGAAAAGGGTTATGGAGTCTTTACAAGAGCTGAATTATTTTGGTTGCAGACAAGGGTGTTCTCCGGCATTGGAACTCAAAAAGAGGCACAACATGCGACGACAATTATCCTCAAAGCCTAAGGAAACTAAAACCAAACTGGAATCGGAAGAATCGAGTGTTTTGCAGGACTTGGGAGCTCAATAG 567 0.4339 MSSPFFEVSDWGTLMEPSDILFEPFSSKDIGYDPFHDCLSFDMIDHSRDPQEPSEVIESMEVVQSKKCGYIGVRRRPWGRFAAEIRDATRKGTRVWLGTFGNAEEAALAYDQAAFVMRGSSAVLNFPVKRVMESLQELNYFGCRQGCSPALELKKRHNMRRQLSSKPKETKTKLESEESSVLQDLGAQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01847 188 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Phco2g01847 188 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Phco2g01847 188 MobiDBLite consensus disorder prediction 158 188 - -
Phco2g01847 188 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Phco2g01847 188 Pfam AP2 domain 68 119 IPR001471 GO:0003700|GO:0006355
Phco2g01847 188 MobiDBLite consensus disorder prediction 158 178 - -
Phco2g01847 188 PANTHER DNA-BINDING DOMAIN 61 180 IPR044808 GO:0003700|GO:0009873
Phco2g01847 188 Gene3D AP2/ERF domain 69 129 IPR036955 GO:0003700|GO:0006355
Phco2g01847 188 FunFam Ethylene-responsive transcription factor 2 68 129 - -
Phco2g01847 188 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Phco2g01847 188 CDD AP2 68 128 IPR001471 GO:0003700|GO:0006355
Phco2g01847 188 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01847 Phco-Chr2 49034961 49035527 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g01847 AP2 3.8e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01847 2 49034961 49035527 Phco11g01308 11 9836962 9837561 ECH
Phco2g01847 2 49034961 49035527 Phco6g01740 6 21382162 21382791 ECH
Phco2g01847 2 49034961 49035527 Phco2g01847 2 49034961 49035527 ECH
Phco2g01847 2 49034961 49035527 Phco6g01046 6 10392764 10393399 PCT