Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1929 ATGGTGATGATGATTCGTACTGCTTGGATCACTGACCTCTTCGCTTGCATGGGTGGTTGTTTTGGATGCTGTATGAAACCAACACCAATTATTGCTGTGGATGAGCCAGCAAAGGGACTAAGAATTCAGGGCCAGTCAGTGAGAAAACCAACCATATCAGATGGGTTCTGGAGTTCGAGTACTTGTGATTTGGATAACAGCACCATTCAATCTCAAAAAAGTATCTCATCAGTCAGCACATTAAATAACATTCTCTATCATAGCAATGGAACTTCATCTGCTGGCACCACTGCTGAATTTGTAAACGAAGGTCTTCTTCTCTGGAATGAGAGCAGGCTTCAGTGGGTTGGAAGTGGAAGATCTAAGAAGCAAACCCAACAAAAACGAGATCCCAAACTAAATTGGAACACATCTTATGAAAGTTTGATTGGGACCAGACAACCATTCCCCAAGTCCGTACCTTTATCCGAAATGGTCGAATTCCTCGTTGATGTTTGGGAGCGCGAAGGGATGTATGGTTGA 522 0.433 MVMMIRTAWITDLFACMGGCFGCCMKPTPIIAVDEPAKGLRIQGQSVRKPTISDGFWSSSTCDLDNSTIQSQKSISSVSTLNNILYHSNGTSSAGTTAEFVNEGLLLWNESRLQWVGSGRSKKQTQQKRDPKLNWNTSYESLIGTRQPFPKSVPLSEMVEFLVDVWEREGMYG* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1929 173 Pfam Protein of unknown function (DUF4050) 132 172 IPR025124 -
Lja4g1929 173 Pfam Protein of unknown function (DUF4050) 60 131 IPR025124 -
Lja4g1929 173 PANTHER DUF4050 FAMILY PROTEIN 1 172 - -
Lja4g1929 173 PANTHER OS07G0479600 PROTEIN 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1929 Lja-Chr4 19599316 19603190 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1929 - - gmx:100813288 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1929 4 19599316 19603190 Lja3g2141 3 25078933 25081887 ECH
Lja4g1929 4 19599316 19603190 Lja3g5202 3 94319828 94323656 ECH
Lja4g1929 4 19599316 19603190 Lja1g3878 1 48910034 48913507 ECH
Lja4g1929 4 19599316 19603190 Lja5g2842 5 55941936 55945946 ECH
Lja4g1929 4 19599316 19603190 Lja4g1929 4 19599316 19603190 ECH