Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1179 ATGGCCGCCATTCCCACGCTCTACCCCTCACTACCCACTATTTCTCTTCAGGCTTCTCCTTCTTCAGCCTCTTCAAAGCCCAACCACCTACAATTACCTTCTACTCTCACTCTGAGCTCTCTATTCGGAACAAGAATCGCGATTCAAACCTCAACTTCGTGTCGTTTCCTTGCCCATGGCAAGGATTGCCGTGCGACACCCGCCTCCGTGTCGCTTAGTCTTCCATCCACGAAACCCCTGGCCGCTACTCCTGAGAATCTTCCAAAATGGTCAGCAAGGGCGATAAAATCATTTGTAATGGCGGAATTGGAAGCGAGGAAGCTCAAGTATCCCAACACAGGAACAGAAGCCCTTCTGATGGGTATCTTAGTTGAAGGAACAAGTAAAGCTGCAAAGTTCTTGCGGGCTAATGGAATTACTCTTCTCAAAGTACGGGAAGAAACATTAGAACTTCTTGGGAAATCTGACATGTATTTCTTCAGTCCTGAGCATCCTCCATTGACTGAACCAGCTCAGAAATCCATTGATTGGGCCGTTGAAGAGAAATTGAAGTCAGGTGAAGGTGGGGAAATAACCGTGAGTCATTTGCTTCTCGGAATTTGGTCACAAAAAGAATCAGCTGGTCACCAGATCCTGGCTGCCCTAGGTTTCAATGATGAAAAAGCCAAAGAAGTTACAGCATTTTTGGACAGTGATGTTGATTTGAGCTTCAAGCAGCAAGCTTAA 726 0.4642 MAAIPTLYPSLPTISLQASPSSASSKPNHLQLPSTLTLSSLFGTRIAIQTSTSCRFLAHGKDCRATPASVSLSLPSTKPLAATPENLPKWSARAIKSFVMAELEARKLKYPNTGTEALLMGILVEGTSKAAKFLRANGITLLKVREETLELLGKSDMYFFSPEHPPLTEPAQKSIDWAVEEKLKSGEGGEITVSHLLLGIWSQKESAGHQILAALGFNDEKAKEVTAFLDSDVDLSFKQQA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1179 241 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 20 237 IPR044217 -
Lele48g1179 241 SUPERFAMILY Double Clp-N motif 89 225 IPR036628 -
Lele48g1179 241 Gene3D - 89 237 IPR036628 -
Lele48g1179 241 Pfam Clp amino terminal domain, pathogenicity island component 101 153 IPR004176 -
Lele48g1179 241 Pfam Clp amino terminal domain, pathogenicity island component 190 228 IPR004176 -
Lele48g1179 241 ProSiteProfiles Clp repeat (R) domain profile. 87 232 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1179 Lele-ChrLele48 16311057 16313506 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele48g1179 48 16311057 16313506 Lele05g2017 05 14384678 14387110 CCT
Lele48g1179 48 16311057 16313506 Lele06g1855 06 13039770 13042202 CCT
Lele48g1179 48 16311057 16313506 Lele07g2060 07 13845512 13847944 CCT
Lele48g1179 48 16311057 16313506 Lele08g1855 08 12903846 12906278 CCT
Lele48g1179 48 16311057 16313506 Lele48g1179 48 16311057 16313506 ECH
Lele45g0270 45 2197279 2199940 Lele48g1179 48 16311057 16313506 hybridization
Lele46g0293 46 1938204 1940659 Lele48g1179 48 16311057 16313506 hybridization