Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0293 ATGGCCGCCATTCCCACGCTCTACCCCTCATCACCCACTATTTCTCTTCAGGCTTCTCCTTCTTCAGCCTCTTCAAAGCCCAACCACCTACAATTACCTTCTACTCTCACTCTGAGCTCTCTATTCGGAACAAGAATCGCGATTCAATCCTCAAGTTTGTGTCGTTTCCTTCCCCATGGCAAGGATTGCCGTGCGACATCTGCCACCGTGTCTCTTAGTCTTCCATCCACGAAACCCCCGGCCGCTACTCCTGAGAATCTTCCAAAATGGTCAGCAAGGGCAATAAAATCATTTGTGATGGCGGAATTGGAAGCGAGGAAGCTCAAGTATCCCAACACAGGAACAGAAGCCCTTCTGATGGGTATCTTAGTTGAAGGAACAAGTAAAGCTGCAAAGTTCTTGCGGGCTAATGGAATTACTCTTCTCAAAGTACGGGAACAAACATTAGAACTTCTTGGGAAATCTGACATGTATTTCTTCAGTCCTGAGCATCCTCCATTGACTGAACCAGCTCAGAAATCCATTGATTGGGCCGTTGAAGAAAAATTGAAGTCAGGTGAAGGTGGGGAAATGACCGTGAGTCATTTGCTTCTCGGAATTTGGTCACAAAAAGAATCAGCTGGTCACCAGATCCTGGCTGCCCTAGGTTTCAATGATGAAAAGGCCAAAGAAGTTGCCACATCATTGGACGGTGATGTTGATTTGAGCTTCAAGCAGCAGGCTTAA 726 0.4669 MAAIPTLYPSSPTISLQASPSSASSKPNHLQLPSTLTLSSLFGTRIAIQSSSLCRFLPHGKDCRATSATVSLSLPSTKPPAATPENLPKWSARAIKSFVMAELEARKLKYPNTGTEALLMGILVEGTSKAAKFLRANGITLLKVREQTLELLGKSDMYFFSPEHPPLTEPAQKSIDWAVEEKLKSGEGGEMTVSHLLLGIWSQKESAGHQILAALGFNDEKAKEVATSLDGDVDLSFKQQA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0293 241 MobiDBLite consensus disorder prediction 1 29 - -
Lele46g0293 241 MobiDBLite consensus disorder prediction 8 29 - -
Lele46g0293 241 Pfam Clp amino terminal domain, pathogenicity island component 190 227 IPR004176 -
Lele46g0293 241 Pfam Clp amino terminal domain, pathogenicity island component 101 153 IPR004176 -
Lele46g0293 241 ProSiteProfiles Clp repeat (R) domain profile. 87 232 IPR004176 -
Lele46g0293 241 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 18 236 IPR044217 -
Lele46g0293 241 SUPERFAMILY Double Clp-N motif 89 231 IPR036628 -
Lele46g0293 241 Gene3D - 89 234 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0293 Lele-ChrLele46 1938204 1940659 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0293 46 1938204 1940659 Lele05g2018 05 14403586 14412286 CCT
Lele46g0293 46 1938204 1940659 Lele06g1856 06 13054418 13063875 CCT
Lele46g0293 46 1938204 1940659 Lele07g2061 07 13858310 13862244 CCT
Lele46g0293 46 1938204 1940659 Lele08g1856 08 12915267 12926898 CCT
Lele46g0293 46 1938204 1940659 Lele46g0293 46 1938204 1940659 ECH
Lele46g0293 46 1938204 1940659 Lele47g1116 47 16788168 16790691 hybridization
Lele46g0293 46 1938204 1940659 Lele48g1179 48 16311057 16313506 hybridization