Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0270 ATGGCCACCATTCCCACGCTCTCCCCCTTACTACCCACAATTTCTCTTCAGGCTTCTCCTTCTTCAGCCTCTTCAAAGCCCAACCACCTACAATTAACTTCTACTCTCACTCTGAGCTCTCTATTCGGAACAAGAATCGCGATTCAAACCTCAAGCACGTGTCATTTCCTTCCCCGTGACAAGTATTGCCGTGCGACATCCGCCACCGTGTCGCTTAGTCTTCCATCCACGAAACCCCCGACGGCTACTCCTGAGAATCTTCCAAAATGGTCAGCAAGGGCGATAAAATCATTTGTGATGGCGGAATTGGAAGCGAGGAAGCTCAAGTATCCCCACACAGGAACAGAAGCCCTTCTGATGGGTATTTTAGTAGAAGGAACAAGTAAAGCTGCAAAGTTCTTGCGGGCTAATGGAATTACTCTTCTTAAAGTACGGGAAGAAACATTAGAACTTCTTGGGAAATCTGATATGTATTTCTTTAGTCCTGAGCATCCTCCGTTGACTGAACCAGCTCAGAAATCCATTGATTGGGCCGTTGAAGAGAAATTGAAGTCAGGTGAAGGTGGGGAAATAACGGTGAGTCATTTGCTTTTAGGAATTTGGGCACAAAAAGAATCAGCCGGTCACCAGATCCTGGCTGCCCTAGGTTTCAATGATGAAAAAGCCAAAGAAGTTGCTACATCGTTGAACGGTGATGTTGATTTGAGCTTCAAGCAGCAAGCTTAA 726 0.4601 MATIPTLSPLLPTISLQASPSSASSKPNHLQLTSTLTLSSLFGTRIAIQTSSTCHFLPRDKYCRATSATVSLSLPSTKPPTATPENLPKWSARAIKSFVMAELEARKLKYPHTGTEALLMGILVEGTSKAAKFLRANGITLLKVREETLELLGKSDMYFFSPEHPPLTEPAQKSIDWAVEEKLKSGEGGEITVSHLLLGIWAQKESAGHQILAALGFNDEKAKEVATSLNGDVDLSFKQQA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0270 241 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 19 236 IPR044217 -
Lele45g0270 241 SUPERFAMILY Double Clp-N motif 89 231 IPR036628 -
Lele45g0270 241 ProSiteProfiles Clp repeat (R) domain profile. 87 232 IPR004176 -
Lele45g0270 241 Gene3D - 89 236 IPR036628 -
Lele45g0270 241 Pfam Clp amino terminal domain, pathogenicity island component 101 153 IPR004176 -
Lele45g0270 241 Pfam Clp amino terminal domain, pathogenicity island component 190 225 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0270 Lele-ChrLele45 2197279 2199940 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0270 45 2197279 2199940 Lele05g2018 05 14403586 14412286 CCT
Lele45g0270 45 2197279 2199940 Lele06g1856 06 13054418 13063875 CCT
Lele45g0270 45 2197279 2199940 Lele07g2061 07 13858310 13862244 CCT
Lele45g0270 45 2197279 2199940 Lele08g1856 08 12915267 12926898 CCT
Lele45g0270 45 2197279 2199940 Lele45g0270 45 2197279 2199940 ECH
Lele45g0270 45 2197279 2199940 Lele47g1116 47 16788168 16790691 hybridization
Lele45g0270 45 2197279 2199940 Lele48g1179 48 16311057 16313506 hybridization