Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1116 ATGGCAAGTATTGCCGCGGGACATCCGCCACCGTGTCGCTTAGTCTTCCATCCACGTAGGTTTCTCCTTACTGATGGTAAATCCTTGATATGATGGTCAGCAAGGGCGATAAAATCATTTGTGATGGCGGAATTGGAAGCGAGGAAGCTCAAGTATCCCAACACAGGAACAGAAGCCCTTCTGATGGGTATTTTAGTAGAAGGAACAAGTAAAGCTGCAAAGTTCTTGCGGGCTAATGGAATTACTCTTCTCAAAGTACGGGAAGAAACATTAGAACTTCTTGGGAAATCTGACATGTATTTCTTTAGTCCTGAGCATCCTCCGTTGACTGAACCAGCTCAGAAATCCATTGATTGGGCTGTTGAAGAGAAATTGAAGTCAGGTGAAGGTGAGGAAATAACGGTGAGTCATTTGCTTCTGGGAATTTGGGCACAAAAAGAATCAGCCGGTCACCAGATCCTGGCTTCCCTAGGTTTCAATGATGAAAAAGCCAAAGAAGTTGCTACATCATTGAACGGTGATGTTGATTTGAGCTTCAAGCAGCAAGCTTAG 552 0.4438 MASIAAGHPPPCRLVFHPRRFLLTDGKSLIXWSARAIKSFVMAELEARKLKYPNTGTEALLMGILVEGTSKAAKFLRANGITLLKVREETLELLGKSDMYFFSPEHPPLTEPAQKSIDWAVEEKLKSGEGEEITVSHLLLGIWAQKESAGHQILASLGFNDEKAKEVATSLNGDVDLSFKQQA 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1116 183 SUPERFAMILY Double Clp-N motif 32 174 IPR036628 -
Lele47g1116 183 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 26 178 IPR044217 -
Lele47g1116 183 Pfam Clp amino terminal domain, pathogenicity island component 43 95 IPR004176 -
Lele47g1116 183 Pfam Clp amino terminal domain, pathogenicity island component 131 168 IPR004176 -
Lele47g1116 183 Gene3D - 31 178 IPR036628 -
Lele47g1116 183 ProSiteProfiles Clp repeat (R) domain profile. 29 174 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1116 Lele-ChrLele47 16788168 16790691 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g1116 47 16788168 16790691 Lele05g2017 05 14384678 14387110 CCT
Lele47g1116 47 16788168 16790691 Lele06g1855 06 13039770 13042202 CCT
Lele47g1116 47 16788168 16790691 Lele07g2060 07 13845512 13847944 CCT
Lele47g1116 47 16788168 16790691 Lele08g1855 08 12903846 12906278 CCT
Lele47g1116 47 16788168 16790691 Lele47g1116 47 16788168 16790691 ECH
Lele45g0270 45 2197279 2199940 Lele47g1116 47 16788168 16790691 hybridization
Lele46g0293 46 1938204 1940659 Lele47g1116 47 16788168 16790691 hybridization