Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1856 ATGCGTGCACTGGCTTTTCACCAGGAGACCTCACGAAGAGACCGTTCATTATCTTCATACGTTTCAAATGAGTGCCATGTTCCTTATGATTTAGTTGAGGATTCAAGTTGCTTTCTAGCGGTAAGACAATTATTTTCCAAGTTTTCTTTCTCCCTTATCTGCTTATCAGATTCGTTAAGAAAGGTTCTTGTTTTGGATGGTGTAATTCAACTCACTGAAAGAGATGAATGTGCCTACCAAGAAATGATCACACATCTTCCTCTGTGCTCAATTCCAAATCCCAAAAAGGTCTCCAAACAATTTTTCCCTGAAGTAGCTGTAGGGTTTGATGATCCACGTGTGACACTTAATGTTGGTGATGGAGATGCTTTTTTGAAAGCTGTTCCATCAGGAACTTATGATATAATCATAGTTGACTCATCTGACCCTATAGGTCCTGCTCAGGAGCTTTTTGGAAAACCCTTTTTCGAGTTGGTTGCTAAGGCTCTTCGTCCTGGAGGAGTTGTGAGCTCTTCGTTCTTGGCCACCAGAGTACGGAAGAAGGCAAAAGCACAGTACTACACGGTACAGAAGCAAAAATCCATGACGACATTGCGTTTCTCTCCTCCTTTCCAAACAAAGAATACAAATTTCTTCTCTTTTCGTCTCCCTCGCGCCGTTTTGCATAACATGGAGAGAGCATCGTCGGAGCAGGTGGATTTCCCATTGTTGCTACGTTCCAATTACAGAGCCGGCACTATTCCTTATAGACTTCCCTCTGATGATCCTCTCAAGCCCACTCCAACCGAGCTTTCTTGGATTAATCTTCTTCTTGGCACCATCCCTTCCTTCAAGAAGCGTGCCGAGAGTGATCCTTCTGTTCCTGATGCTGCTAATAGAGCTGAGAAATTTGCTCAAAGATATGCTGAAATACTCGAAGATTTCAAGAAGAATCCTGAAAGTCATGGCTGGAGACTTGATGGAATTATTATCTGCAGTCTTCGTGAGCAAATACTAAGAGAATTAGGATTCAGAGATATCTTTAAGCAAGTTAAGGAAGAAGAAAATGCGAAAGCCATGACCCTGTTTGAGGATGTTGTCCGACTTAATGATGCTATTGAGGATGAAGGCAAGAGACTTGAGAATCTAGTTAGAGGAATTTTCGCAGGAAACATATTTGATCTTGGTTCCGCACAGGTTATCATATTTGTTGATAATTCCGGTGCCGATATCGTTTTGGGTATTTTGCCATTTGCAAGGGAGCTGCTTCGGCTTGGGATTCAGGTTGTATTGGCTGCTAACGAGTTACCTTCTATTAACGATGTAACTTACCCTGAGTTAGTTGAAATTATATCAAAGTTGAAGGATGAAGAAGGACGGCTAATGGGCGTCGATACTTCAAATCTTGTCATTGCTAACTCTGGCAACGATTTGCCGGTTATTGATCTTACCCGGGTGTCACAAGAAATTGCATGCCTGGCCAATGATACAGATCTAGTCATATTAGAAGGGATGGGTCGTGGTATAGAAACAAATCTGCATGCTGACTTTACATGTGACTCCCTCAAGATTGGAATGGTTAAACATCCTGAAGTTGCAGAATTTCTTGGGAGCCGTCTTTATGACTGTGTCTTTAAATTCAAACAAGTTCCCAGTTTACAATGTTGA 1647 0.4189 MRALAFHQETSRRDRSLSSYVSNECHVPYDLVEDSSCFLAVRQLFSKFSFSLICLSDSLRKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVSKQFFPEVAVGFDDPRVTLNVGDGDAFLKAVPSGTYDIIIVDSSDPIGPAQELFGKPFFELVAKALRPGGVVSSSFLATRVRKKAKAQYYTVQKQKSMTTLRFSPPFQTKNTNFFSFRLPRAVLHNMERASSEQVDFPLLLRSNYRAGTIPYRLPSDDPLKPTPTELSWINLLLGTIPSFKKRAESDPSVPDAANRAEKFAQRYAEILEDFKKNPESHGWRLDGIIICSLREQILRELGFRDIFKQVKEEENAKAMTLFEDVVRLNDAIEDEGKRLENLVRGIFAGNIFDLGSAQVIIFVDNSGADIVLGILPFARELLRLGIQVVLAANELPSINDVTYPELVEIISKLKDEEGRLMGVDTSNLVIANSGNDLPVIDLTRVSQEIACLANDTDLVILEGMGRGIETNLHADFTCDSLKIGMVKHPEVAEFLGSRLYDCVFKFKQVPSLQC 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1856 548 FunFam Pantothenate kinase 4 249 338 - -
Lele08g1856 548 SUPERFAMILY AF1104-like 241 541 IPR036075 -
Lele08g1856 548 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 97 229 IPR030374 -
Lele08g1856 548 Pfam Spermine/spermidine synthase domain 97 171 - -
Lele08g1856 548 Pfam Damage-control phosphatase ARMT1-like domain 391 534 IPR002791 -
Lele08g1856 548 Pfam Damage-control phosphatase ARMT1-like domain 275 391 IPR002791 -
Lele08g1856 548 Gene3D - 249 338 IPR035073 -
Lele08g1856 548 FunFam Pantothenate kinase 381 542 - -
Lele08g1856 548 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 55 186 IPR029063 -
Lele08g1856 548 CDD AdoMet_MTases 100 174 - -
Lele08g1856 548 PANTHER PANTOTHENATE KINASE 393 458 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lele08g1856 548 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 387 543 - -
Lele08g1856 548 Gene3D Vaccinia Virus protein VP39 98 234 IPR029063 -
Lele08g1856 548 Gene3D Vaccinia Virus protein VP39 71 97 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1856 Lele-ChrLele08 12915267 12926898 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0270 45 2197279 2199940 Lele08g1856 08 12915267 12926898 CCT
Lele46g0293 46 1938204 1940659 Lele08g1856 08 12915267 12926898 CCT
Lele05g2018 05 14403586 14412286 Lele08g1856 08 12915267 12926898 hybridization
Lele06g1856 06 13054418 13063875 Lele08g1856 08 12915267 12926898 hybridization