Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0763 ATGCCGGAGCTACCGGAGGTAGAGGCGACTAGAAGAGCCGTGGAAGATAACTGTATCGGCAAGAAGATAAAGAAGGCGATCATAGCCGACGATTCCAAAGTCATCGATGGAGTCTCTCGCTCGGAGTTCGAGGCTTCCATCTTGGGCAAGACCATCGTTGCAGCTCGCCGTAAGGGCAAGAACATGTGGCTTGAGCTTGATTCCCCACCATTTCCTTCGTTCCAATTCGGCATGGCTGGTGCTATATACATTAAGGGTGTTGCAGTTACAAAGTATAAAAGATCTGCTGTAAAGGATGAGGATGAGTGGCCTTCCAAATATTCAAAATTTTTCATTGAGCTGGATGATGGCTTGGAGGTGTCCTTCACTGACAAAAGGCGGTTCGCTAGAGTTCGCCTTCTCAATGATCCAACATCAGTGCCCCCCATATCTGAGCTTGGTCCTGATGCACTTTTGGAACCTATGACACTTGAAGAATTGATTGTATCTCTGCAAAAGAAAAAAACTGAAATCAAGGCTTTATTACTTGATCAAAGTTTTATTTCGGGTATTGGAAATTGGGTTGCAGACGAAGTTCTGTACCAAGCAAGAATTCATCCGAGGCAGACGGCTTCTAGCCTGTCCAAAGAAAACTGCTCAACTTTGCACAAGAGCATTAAAGAGGTCATTGAAAAAGCAGTTGAAGTTGGAGCTGATAGTAGCCAGTATCCTGCCGGTTGGATATTTCATTCACGCGAAAAGAAGCCGGGCAAGGCTTTTGTGGATGGGAAAAAGATTGACTTTATTACAGCAGGAGGCAGGACGACTGCTTATGTCCCAGAGTTGCAAAAGCTAAGTGGGTCACAGGATGTAAAAGAAGCTGGCAAACCTAAAAAGCGAACTTCAAAGAAAAACAAAGGTGAAGATGACGATGATGATAATGACGATGACACTGAGGAACCAGCAAAAGAAGAGAAGAATGCGGCAAGTCTGAAATCAAAAAAGGGAACAAAGGGTGGAGGTAAAGGGAGGAAGCAATCCAAAAAGAATAAATCAAAGGAAAGCAATGACGACGACAACGATGATGATGAAAATGATGAAGGTGACGATGAGACCAGTGCTGCTGCTGATGACGATGGCGACCACGATAATGCTGAAAAGAAGAAACCAAACCAGGTGACAAAAAGTAAACAGACCAAGGGAGAGAAGAAATCAAACAAAAGAGCTCAAACTAGTCAAAATAGTAAGAATGCGAAAAGGAAGGTTAAGTAGTATGTTCCACTTTTAGAACCGGTAGTGCTATCCTTGTCGCCCGTCGGATTCCCTCTGAAATCTTGCGGCGCTGTATTATCTCATTCCAATTCTTTGTTGCACGAACGCGCTGATTTTCGTGGGAGCAACCAACAATTGTTTACCTATAGTTTCCGGCCGTGGTTACATGATTCCTTTTGGCTAGGATCATTTTACGACAGATTCAAGGAGTTGGGATCAAGGTTTGACAAGTAA 1485 0.4397 MPELPEVEATRRAVEDNCIGKKIKKAIIADDSKVIDGVSRSEFEASILGKTIVAARRKGKNMWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVKDEDEWPSKYSKFFIELDDGLEVSFTDKRRFARVRLLNDPTSVPPISELGPDALLEPMTLEELIVSLQKKKTEIKALLLDQSFISGIGNWVADEVLYQARIHPRQTASSLSKENCSTLHKSIKEVIEKAVEVGADSSQYPAGWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLSGSQDVKEAGKPKKRTSKKNKGEDDDDDNDDDTEEPAKEEKNAASLKSKKGTKGGGKGRKQSKKNKSKESNDDDNDDDENDEGDDETSAAADDDGDHDNAEKKKPNQVTKSKQTKGEKKSNKRAQTSQNSKNAKRKVKXYVPLLEPVVLSLSPVGFPLKSCGAVLSHSNSLLHERADFRGSNQQLFTYSFRPWLHDSFWLGSFYDRFKELGSRFDK 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0763 494 SUPERFAMILY N-terminal domain of MutM-like DNA repair proteins 2 151 IPR035937 -
Lele42g0763 494 MobiDBLite consensus disorder prediction 273 412 - -
Lele42g0763 494 SMART H2TH_2 146 238 IPR015886 GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799
Lele42g0763 494 Pfam Formamidopyrimidine-DNA glycosylase H2TH domain 146 235 IPR015886 GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799
Lele42g0763 494 PANTHER FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1 407 - -
Lele42g0763 494 SUPERFAMILY S13-like H2TH domain 146 233 IPR010979 GO:0003676
Lele42g0763 494 Pfam Formamidopyrimidine-DNA glycosylase N-terminal domain 1 131 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Lele42g0763 494 MobiDBLite consensus disorder prediction 371 402 - -
Lele42g0763 494 Gene3D - 1 145 IPR035937 -
Lele42g0763 494 Gene3D - 146 287 - -
Lele42g0763 494 ProSiteProfiles Formamidopyrimidine-DNA glycosylase catalytic domain profile. 2 129 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Lele42g0763 494 CDD PF_Nei_N 1 134 - -
Lele42g0763 494 FunFam Formamidopyrimidine-DNA glycosylase 146 285 - -
Lele42g0763 494 MobiDBLite consensus disorder prediction 350 370 - -
Lele42g0763 494 FunFam Putative Formamidopyrimidine-DNA glycosylase 1 145 - -
Lele42g0763 494 TIGRFAM fpg: DNA-formamidopyrimidine glycosylase 1 268 IPR020629 GO:0003906|GO:0006281|GO:0008270|GO:0008534
Lele42g0763 494 SMART Fapy_DNA_glyco_2 2 132 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Lele42g0763 494 MobiDBLite consensus disorder prediction 284 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0763 Lele-ChrLele42 20644050 20657160 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0763 42 20644050 20657160 Lele37g0522 37 4313853 4314506 CCT
Lele42g0763 42 20644050 20657160 Lele38g0494 38 4018197 4018853 CCT
Lele42g0763 42 20644050 20657160 Lele39g0904 39 17966671 17967327 CCT
Lele42g0763 42 20644050 20657160 Lele40g0466 40 3869556 3870209 CCT
Lele42g0763 42 20644050 20657160 Lele43g0626 43 5535274 5539484 hybridization
Lele42g0763 42 20644050 20657160 Lele44g0579 44 4497660 4501900 hybridization