Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0626 ATGCCGGAGTTGCCGGAGGTAGAGGCGGCTAGAAGAGCCGTGGAGGATAACTGTATTGGCAAGAAGATAAAGAAGGCGATTATAGCCGACGATTCCAAAGTCATCGATGGAGTCTCTCGCTCGGAGTTCGAGGCTTCCCTCTTGGGCAAGACCATCGTCTCAGCTTGTCGTAAGGGCAAGAATATGTGGCTTGAGCTTGATTCTCCACCATTTCCTTCGTTCCAATTCGGCATGGCCGGTGCTATATACATTAAGGGTGTCGCAGTTACAAAGTATAAAAGATCTGCTATAAAGGATGAGGATGAGTGGCCTTCCAAGTATTCAAAATTTTTCATTGAGTTGGATGATGGCTTGGAGTTGTCCTTCACTGATAAAAGGCGGTTCGCTAGAGTTCGCCTTCTCAATGATCCAATATCAGTGCCCCCCATATCTGAGCTTGGTCCGGATGCACTTTTGGAACCTATGACACTTGAAGAATTGACTGAATCTCTGCAAAAGAAAAAAACTGAAATCAAGGCTTTATTACTTGATCAAAGTTTTATTTCGGGTATTGGAAATTGGGTTGCAGATGAAGTTTTGTACCAAGCAAGAATTCATCCGAGGCAGACGGCTTCTAGCCTGTCCAAAGAAAACTGCTCAACTTTGTGCAAGTGCATTAAAGAGGTCATTGAAAAAGCAATTGAAGTTGGAGCAGATAATAGCCAGTATCCTGCTGGTTGGATATTTCATTCACGCGAAAAGAAGCCGGGCAAGGCTTTTGTGGATGGGAAAAAAATTGACTTCATTACAGCAGGAGGCAGGACGACTGCTTATGTCCCAGAGTTGCAAAAGCTAAGTGGGTCACAGGATGTAAAAGAAGCTGGCAAACCTAAAAGGCGAACTTCAAAGAAAAACAAAGGTGAAGATGATGATGACGACAATGACACTGAGGAACCAGCAAAAGAAGAGAAGAATGCGGCAAGTCTGAAATCAAAAAAGGGAACAAAGGGTGGAGGTAAAGGTAGGAGGCAATCTAAAAAGAATAAATCAAAGGAAAGTGACGACGATGACAGTGATGATGATGATAAAAATGATGAAGTTGATGATGACATTGGTGCTGCTGCTGACGACAATGATAATGATGAAGCTGAAAAGAAGAAACTAAACCAGGTGACAAAAAGTAGACAGGCCAAGGGGGAGAAGAAATTAAACAAAAGAGCTCAAACTAGTCAAAATAGTAAGAATGCGAAAAGGAAGGTTAAGTAG 1245 0.4273 MPELPEVEAARRAVEDNCIGKKIKKAIIADDSKVIDGVSRSEFEASLLGKTIVSACRKGKNMWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAIKDEDEWPSKYSKFFIELDDGLELSFTDKRRFARVRLLNDPISVPPISELGPDALLEPMTLEELTESLQKKKTEIKALLLDQSFISGIGNWVADEVLYQARIHPRQTASSLSKENCSTLCKCIKEVIEKAIEVGADNSQYPAGWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLSGSQDVKEAGKPKRRTSKKNKGEDDDDDNDTEEPAKEEKNAASLKSKKGTKGGGKGRRQSKKNKSKESDDDDSDDDDKNDEVDDDIGAAADDNDNDEAEKKKLNQVTKSRQAKGEKKLNKRAQTSQNSKNAKRKVK 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0626 414 Gene3D - 146 287 - -
Lele43g0626 414 MobiDBLite consensus disorder prediction 371 400 - -
Lele43g0626 414 SUPERFAMILY S13-like H2TH domain 146 231 IPR010979 GO:0003676
Lele43g0626 414 MobiDBLite consensus disorder prediction 273 414 - -
Lele43g0626 414 MobiDBLite consensus disorder prediction 348 370 - -
Lele43g0626 414 FunFam Putative Formamidopyrimidine-DNA glycosylase 1 145 - -
Lele43g0626 414 Pfam Formamidopyrimidine-DNA glycosylase N-terminal domain 1 131 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Lele43g0626 414 SMART H2TH_2 146 238 IPR015886 GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799
Lele43g0626 414 SUPERFAMILY N-terminal domain of MutM-like DNA repair proteins 2 151 IPR035937 -
Lele43g0626 414 Coils Coil 157 177 - -
Lele43g0626 414 MobiDBLite consensus disorder prediction 284 303 - -
Lele43g0626 414 ProSiteProfiles Formamidopyrimidine-DNA glycosylase catalytic domain profile. 2 129 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Lele43g0626 414 CDD PF_Nei_N 1 134 - -
Lele43g0626 414 Pfam Formamidopyrimidine-DNA glycosylase H2TH domain 146 234 IPR015886 GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799
Lele43g0626 414 SMART Fapy_DNA_glyco_2 2 132 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Lele43g0626 414 Gene3D - 1 145 IPR035937 -
Lele43g0626 414 PANTHER FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1 395 - -
Lele43g0626 414 TIGRFAM fpg: DNA-formamidopyrimidine glycosylase 1 268 IPR020629 GO:0003906|GO:0006281|GO:0008270|GO:0008534
Lele43g0626 414 FunFam Formamidopyrimidine-DNA glycosylase 146 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0626 Lele-ChrLele43 5535274 5539484 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0770 41 17578063 17582293 Lele43g0626 43 5535274 5539484 hybridization
Lele42g0763 42 20644050 20657160 Lele43g0626 43 5535274 5539484 hybridization