Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0770 ATGCCGGAGTTGCCGGAGGTAGAGGCGGCTAGAAGAGCCGTGGAGGATAACTGTATCGGCAAGAAGATAAAGAAGGCGATTATAGCCGAAGATTCCAAAGTCATCGATGGAGTATCTCGCTCGGAGTTCGAGGCTTCCCTCTTGGGCAAGACCATCGTCGCAGCTCGTCGTAAGGGCAAGAATATGTGGCTTGAGCTTGATTCTCCACCATTTCCTTCGTTCCAATTCGGCATGGCCGGTGCTATATACATTAAGGGTGTTGCAGTTACAAAGTATAAAAGATCTGCTATAAAGGATGAGGATGAGTGGCCTTCCAAGTATTCAAAATTTTTCATTGAGTTGGATGATGGCTTGGAGTTGTCCTTCACTGACAAAAGGCGGTTCGCTAGAGTTCGCCTTCTCAATGATCCAACATCAATGCCCCCCATAGCTGAGCTTGGTCCGGATGCACTTTTGGAACCTATGACACTTGAAGAATTGACTGAGTCTCTGCAAAAGAAAAAAACTGAAATCAAGGCTTTATTACTTGATCAAAGTTTTATTTCGGGTATTGGAAATTGGGTTGCAGATGAAGTTCTGTACCAAGCAAGAATTCATCCGAGGCAGACGGCTTCTAGCCTGTCCAAAGAAAACTGCTCAACTTTGTACAAGTGCATTAAAGAGGTCATTGAAAAAGCAGTTGAAGTTGGAGCTGATAGTAGCCAGTATCCTGCTGGTTGGATATTTCATTCACGCGAAAAGAAGCCGGGCAAGGCTTTTGTGGATGGGAAAAAAATTGACTTCATTACAGCAGGAGGCAGGACGACTGCTTATGTCCCAGAGTTGCAAAAGCTAAGTGGGTCACAGGATGTAAAAGAAGCTGGCAAACCTAAAAGGCGAACTTCAAAGAAAAACAAAGGTGAAGATGATGACGACGACAATGACACTGAGGAACCAGCAAAAGAAGGGAAGAATGCCGCTAGTTTGAAATCAAAAAAGGGAACAAAGGGTGGAGGTAAAGGTAGGAGGCAATCCAAAAAGAATAAATCAAACGAAAGTGACGACGACGACAGTGATGATGATGATGATGAAAATGATGAGACTGGTGCTGCTGATGACGACAAAGATAATCATGAAGCTGAAAAAAAGAAACCAAACCAGGTGACAAAAAGTAGACAGGCCAAGGGGGAGAAGAAATTAAACAAAAGAGCTCAAACTAGTCAAAATAGTAAGAATGCGAAAAGGAAGGTTAAGTAG 1236 0.4353 MPELPEVEAARRAVEDNCIGKKIKKAIIAEDSKVIDGVSRSEFEASLLGKTIVAARRKGKNMWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAIKDEDEWPSKYSKFFIELDDGLELSFTDKRRFARVRLLNDPTSMPPIAELGPDALLEPMTLEELTESLQKKKTEIKALLLDQSFISGIGNWVADEVLYQARIHPRQTASSLSKENCSTLYKCIKEVIEKAVEVGADSSQYPAGWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLSGSQDVKEAGKPKRRTSKKNKGEDDDDDNDTEEPAKEGKNAASLKSKKGTKGGGKGRRQSKKNKSNESDDDDSDDDDDENDETGAADDDKDNHEAEKKKPNQVTKSRQAKGEKKLNKRAQTSQNSKNAKRKVK 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0770 411 SUPERFAMILY S13-like H2TH domain 146 233 IPR010979 GO:0003676
Lele41g0770 411 Pfam Formamidopyrimidine-DNA glycosylase H2TH domain 146 235 IPR015886 GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799
Lele41g0770 411 PANTHER FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1 400 - -
Lele41g0770 411 FunFam Putative Formamidopyrimidine-DNA glycosylase 1 145 - -
Lele41g0770 411 Pfam Formamidopyrimidine-DNA glycosylase N-terminal domain 1 131 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Lele41g0770 411 MobiDBLite consensus disorder prediction 273 411 - -
Lele41g0770 411 Coils Coil 157 177 - -
Lele41g0770 411 MobiDBLite consensus disorder prediction 284 303 - -
Lele41g0770 411 SUPERFAMILY N-terminal domain of MutM-like DNA repair proteins 2 151 IPR035937 -
Lele41g0770 411 MobiDBLite consensus disorder prediction 347 363 - -
Lele41g0770 411 CDD PF_Nei_N 1 134 - -
Lele41g0770 411 TIGRFAM fpg: DNA-formamidopyrimidine glycosylase 1 268 IPR020629 GO:0003906|GO:0006281|GO:0008270|GO:0008534
Lele41g0770 411 Gene3D - 1 145 IPR035937 -
Lele41g0770 411 SMART H2TH_2 146 238 IPR015886 GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799
Lele41g0770 411 SMART Fapy_DNA_glyco_2 2 132 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Lele41g0770 411 ProSiteProfiles Formamidopyrimidine-DNA glycosylase catalytic domain profile. 2 129 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Lele41g0770 411 FunFam Formamidopyrimidine-DNA glycosylase 146 285 - -
Lele41g0770 411 Gene3D - 146 287 - -
Lele41g0770 411 MobiDBLite consensus disorder prediction 364 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0770 Lele-ChrLele41 17578063 17582293 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0770 41 17578063 17582293 Lele37g0522 37 4313853 4314506 CCT
Lele41g0770 41 17578063 17582293 Lele38g0494 38 4018197 4018853 CCT
Lele41g0770 41 17578063 17582293 Lele39g0904 39 17966671 17967327 CCT
Lele41g0770 41 17578063 17582293 Lele40g0466 40 3869556 3870209 CCT
Lele41g0770 41 17578063 17582293 Lele43g0626 43 5535274 5539484 hybridization
Lele41g0770 41 17578063 17582293 Lele44g0579 44 4497660 4501900 hybridization