Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0290 ATGTCTGGAATTATTGTGGTTTTCGACTTCGACAAGACCATTGTTGACTGCGATAGTGACAATTGGGTCGTCGACGAGCTCGGTTTCACAGACTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGGATAGGATGATGATGGAGCTTCATTCACAAGGAGTAACCATTGAAGAAATTGAAGAGGTTCTGAAGAGAATTCCTATTCATCCCAGAGTAGTTCCTGCTATTAAAGCAGCTCATGCTTTAGGGTGTGATTTAAGGGTTGTGAGTGATGCAAATATGTTCTTCATTGAGACAATTTTGAAGCATTTGGGAATAAAGGATTGCTTCTCTGAGATTAACACTAATCCTGGCTATGTTAATGGAGAAGGAAGGTTGAGGATTTTGCCTTACTATGACTTTAACAAAGCTCCCCATGGCTGTGGTCTCTGCCCTCCAAACATGTGCAAGGGTCTGATCATAGAGAGGATTCAAGATTCAATATCTCCTGAAGGAAGCAAGAGGTTCATCTATCTTGGTGATGGAGCTGGGGACTACTGTCCAAGCTTGAGGCTGAAAGAGAGGGATTGTGTGATGCCAAGGAAGAACTTTCCTGTGTGGGACTTGATATGCAAAGACCCTTTGCTTGTGAAGGCTAAAATCCATGAATGGAGTGATGGGGAAGATCTTGAGAGGGTTTTGATTCACTTGATCAACAAGATTTCTAAGGAAGAAGAAGAAGAAGCATCTCAGTTCATCTCACCTGGTTGCAAGCTGCAGACTTTGTCCGTGTCTGCTCCTGAGTCTCTGCCTCGACCTCTCCGAGAGTACCATGAGATGGAGCGGGAGTGGAGGATGCGTTCAAATCTCGGGTCGGTGCGGGTGGAATACATTATCGAAACGTTGGCCGTCACCGCATTGGCTGCTCCAAAGATTCCCTGGACCTCAAGCAAGACGGAGGAGTCCGACAATGCAGGGTTGTCGGCCAGTTACTGTTCCCAAGATGTGTTTGGTTGTGAATATGCCTATTAA 1023 0.4565 MSGIIVVFDFDKTIVDCDSDNWVVDELGFTDLFNQLLPTMPWNSLMDRMMMELHSQGVTIEEIEEVLKRIPIHPRVVPAIKAAHALGCDLRVVSDANMFFIETILKHLGIKDCFSEINTNPGYVNGEGRLRILPYYDFNKAPHGCGLCPPNMCKGLIIERIQDSISPEGSKRFIYLGDGAGDYCPSLRLKERDCVMPRKNFPVWDLICKDPLLVKAKIHEWSDGEDLERVLIHLINKISKEEEEEASQFISPGCKLQTLSVSAPESLPRPLREYHEMEREWRMRSNLGSVRVEYIIETLAVTALAAPKIPWTSSKTEESDNAGLSASYCSQDVFGCEYAY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0290 340 SUPERFAMILY HAD-like 4 198 IPR036412 -
Lele40g0290 340 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 6 187 - -
Lele40g0290 340 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4 199 IPR006384 GO:0016791
Lele40g0290 340 Gene3D - 2 188 IPR023214 -
Lele40g0290 340 Pfam Putative Phosphatase 4 235 IPR016965 GO:0016791
Lele40g0290 340 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 243 IPR016965 GO:0016791
Lele40g0290 340 Coils Coil 224 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0290 Lele-ChrLele40 2343480 2345422 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0290 40 2343480 2345422 Lele41g0940 41 18933199 18935754 CCT
Lele40g0290 40 2343480 2345422 Lele42g0911 42 21860165 21863959 CCT
Lele40g0290 40 2343480 2345422 Lele43g0458 43 4008747 4017243 CCT
Lele40g0290 40 2343480 2345422 Lele44g0448 44 3347584 3351852 CCT
Lele37g0327 37 2748385 2749900 Lele40g0290 40 2343480 2345422 hybridization
Lele38g0311 38 2452109 2454078 Lele40g0290 40 2343480 2345422 hybridization