Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0911 ATGGGTTTCTTGTGGTGGCTCAGAATGATAATCATCTGCCATTTCTTTGCTGCAACACTCATCTCCTCGGACCCTTCTTTGAGCTCACCGAACAAACTCTCTTCGACGTCCTCCGAATTTCTAGATTTTGCCAAGAAGCGTGAGGTTTTTGATTGGATGGTCGGAATCAGAAGGAAGCTTCACGAGAATCCTGAGTTGCTTTATGAGGAATTTCAGACCAGTGATCTCATCAGAAGACAACTCGATACATTGGGCGTATCGTATAAATACCCAATTGCAGTCACCGGTGTTATTGGCTATATAGGCACCGGACGACCTCCTTTTGTCGCTATCAGAGCTGATATGGATGCTCTTCCTATTCAAGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTTCCTGGAAAGATGCATGCTTGTGGCCATGATGCTCATGTTACTATGCTTCTCGGTGCCGCAAAGATACTCAAAGAGTATGAAAAAGACATACAGGGAACTGTAGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGCAGGAGCTAAGAAAGTTATAGATGCTGGGGCCTTAGAAAATGTCTCTGCCATCTTTGGATTGCATGTTCTACCAAACATACCTATAGGCAAAGTGGGTTCTAGATCGGGTCCTCTTATGGCCGGAAGTGGCTTCTTTGAAGCAGTAATAAGTGGAAAGGGAGGTCATGCTGCTCTTCCTCAGCATTCTGTAGACCCCATTTTGGCAGCTTCTAATGTCATTGTTAGCTTACAGCATCTTATTTCTCGCGAGGCCGATCCTTTGGACTCTCAGGTCGTGACAATAGCAAAATTCCATGGAGGTGGTGCTTTCAATGTTATTCCAGATTCTGTCACTATTGGTGGCACCTTCCGCTCCTTTTCAAAAGAAAGTTTTATGCAACTAAAGAAGCGGATTGAACAGGTTATCACTGGACAAGCTGCTGTTCAGAGGTGCAATGCAACAATTAACTTTTTCGAAGAGAAGCATGGTTTCTACCCTGCTACCGTTAACGATGGCAAATTGCACGAGCATTTTCAACAAGTTGCAGGGGATATGCTTGGCCCAAAAAAGGTTAACGACGTGAAGCCGATGATGGGAGCTGAGGACTTCTCATTCTATCAAGAGGTTATCCCTGGTTACTTCTTTCTTCTTGGAATGAAGGATGCTTCTCTTGGACCACTTGAGTCTCTACACTCGCCTAATTTCAGAGTCAATGAAGATGTTCTTCCTTATGGAGCTGCACTTCATGCATCATTAGCTACTAGCTATCTCCTTCGATTTAAGCAGGATGAAAAAGTTGCAGGAGGGACTTGTCATGATGAACTATGA 1341 0.4437 MGFLWWLRMIIICHFFAATLISSDPSLSSPNKLSSTSSEFLDFAKKREVFDWMVGIRRKLHENPELLYEEFQTSDLIRRQLDTLGVSYKYPIAVTGVIGYIGTGRPPFVAIRADMDALPIQEMVEWEHKSKVPGKMHACGHDAHVTMLLGAAKILKEYEKDIQGTVVLVFQPAEEGGAGAKKVIDAGALENVSAIFGLHVLPNIPIGKVGSRSGPLMAGSGFFEAVISGKGGHAALPQHSVDPILAASNVIVSLQHLISREADPLDSQVVTIAKFHGGGAFNVIPDSVTIGGTFRSFSKESFMQLKKRIEQVITGQAAVQRCNATINFFEEKHGFYPATVNDGKLHEHFQQVAGDMLGPKKVNDVKPMMGAEDFSFYQEVIPGYFFLLGMKDASLGPLESLHSPNFRVNEDVLPYGAALHASLATSYLLRFKQDEKVAGGTCHDEL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0911 446 SUPERFAMILY Bacterial exopeptidase dimerisation domain 218 337 IPR036264 -
Lele42g0911 446 CDD M20_IAA_Hyd 53 428 IPR044757 GO:0009850|GO:0016787
Lele42g0911 446 PANTHER PEPTIDASE M20 FAMILY MEMBER 32 434 IPR017439 GO:0016787
Lele42g0911 446 SUPERFAMILY Zn-dependent exopeptidases 47 428 - -
Lele42g0911 446 Gene3D Zn peptidases 53 413 - -
Lele42g0911 446 FunFam N-acetyldiaminopimelate deacetylase 218 336 - -
Lele42g0911 446 PIRSF Amidohydrol_AmhX 38 431 IPR017439 GO:0016787
Lele42g0911 446 Pfam Peptidase dimerisation domain 219 315 IPR011650 -
Lele42g0911 446 Pfam Peptidase family M20/M25/M40 110 424 IPR002933 GO:0016787
Lele42g0911 446 Gene3D - 218 336 - -
Lele42g0911 446 TIGRFAM amidohydrolases: amidohydrolase 53 415 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0911 Lele-ChrLele42 21860165 21863959 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0311 38 2452109 2454078 Lele42g0911 42 21860165 21863959 CCT
Lele39g1096 39 19538646 19540582 Lele42g0911 42 21860165 21863959 CCT
Lele40g0290 40 2343480 2345422 Lele42g0911 42 21860165 21863959 CCT
Lele42g0911 42 21860165 21863959 Lele43g0458 43 4008747 4017243 hybridization
Lele42g0911 42 21860165 21863959 Lele44g0448 44 3347584 3351852 hybridization