Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0134 ATGGCGGAGGGTGGAGGCAATGATGGGGCCTTCCCCAGTGACAAAGGGGCGCGAATCTCATGGTCGCCTCCACGTGGGGCCCTGCCATTCGAGCTCCTCAATGAGGCGGCGCAGACGCAGAAGGGGGACAAAGACTCCAAGAGGTCAACGTCTTCAGAATATGATGGTGATGTAGATGAGCATGAGCCACGACCCACCCTAACCTTTCCCTTTCGGCTCTCCGAACAAGGTCCTGCCTCTCGGCCATTCCGCATAAGGGGAGATGCGGAATTAGGAATGATTTGGCAGAACTTCCCAGGTCTCAACGCCACAATGGTGCATTATTGTGTGAGGGGAGGTGGCACTTGCTTGAGGTGTGGCACCTCTCTGAAGGAGAAGATATACCAAAGAGAGAAAGGGATGGGCCAAGGTCTGAGCTGCGCTGGGAGCCATGAACATGGCCTCTTCACTGCGGTCCAGCATGGAGATATCGCCACTCTCAGAAATCTCTTGCGTAGAGATCCAATTATTGTGCACCACACTACCGTCTACGATCGCCATTCTGCTCTTCATATAGCCGCTGCTAATGGCCAGATCGAGATTCTGTCTATGCTGTTAGATGGATCTATTAATCTAGATGTCTTGAATCGTCAAAAGCAGACTCCGCTCATGTTGGCTGCAATGAACGGAAAGATCGCCTGTGTGAAAAAACTCCTTGAAGTTGGAGCTAATGTATTGATGTTTGATTCGCTTTACGGTAGAACCTGCCTGCACTACGCAGCCTACTACGGTCACTCTTCTTGCCTTGAAGCAATTCTTTCTGCGGCACAATCTAGTCCAGTAGCCGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTAGGGACGGTAGAGGAGCGACGCCATTACACTTGGCTGCCCGTCAGAGACGGCCCCAATGTGTGCATATCCTATTACACAATGGAGCTCTTGTCTGTGCTTCGACAGGCGGATATGGCTGTCCTGGGAGCACTCCTCTTCACTTAGCTGCCAGAGGGGGATCTCTGGATTGCATACGTGAACTGTTGGCATGGGGTGCAGATCGTATTCAACGGGATGCCTCAGGGCGGATACCATATGTAGTTGCTCTGAAGCACAAGCATGGAGCATGTGCAGCATTGTTAAATCCTACATCTGCCGAACCCCTTGTGTGGCCTTCACCTTTGAAGTTCATCAGTGAACTTAATCCAGATGCCAAAGCATTATTAGAACGGGCCTTGATGGACGCAAACAGGGAAAGGGAGAAAAATATATTGAAAGGAAGCGCTTACTCTCTTCCATCTCCATCACATTCTGATAATGGGGTAGATGACAGTATCTCTGGGGCCAGTGAGACGGAACTGTGCTGCATCTGCTTTGAGCAGGTGTGCACAATTGAAGTCCAGAACTGTGGCCACCAGATGTGTGAACAATGCACTTTAGCCCTCTGTTGTCACAACAAGCCTAATCCTGCTACTGCTTGCCTTACTCCTCCTGTTTGTCCATTTTGCCGAAGCACCATAGCTAGACTGGTGGTTGTGAAGATCGAGAGTCACGAGGACACAGATGTAGAAGCCGGGGATGTCAGTTCTTCAAAGTTAAGCAAGTCAAAGAAAGCCCGAAACTTGAACGAAGGCAGCAGCAACAGCTTCAAGGGACTATCATTCGGAAAGATGAGTGGACGCAGCTCTGGAAGGATTGTTGCGGAAAATGAGTGGATTGATAAAGAGTGA 1728 0.5012 MAEGGGNDGAFPSDKGARISWSPPRGALPFELLNEAAQTQKGDKDSKRSTSSEYDGDVDEHEPRPTLTFPFRLSEQGPASRPFRIRGDAELGMIWQNFPGLNATMVHYCVRGGGTCLRCGTSLKEKIYQREKGMGQGLSCAGSHEHGLFTAVQHGDIATLRNLLRRDPIIVHHTTVYDRHSALHIAAANGQIEILSMLLDGSINLDVLNRQKQTPLMLAAMNGKIACVKKLLEVGANVLMFDSLYGRTCLHYAAYYGHSSCLEAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPQCVHILLHNGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRIQRDASGRIPYVVALKHKHGACAALLNPTSAEPLVWPSPLKFISELNPDAKALLERALMDANREREKNILKGSAYSLPSPSHSDNGVDDSISGASETELCCICFEQVCTIEVQNCGHQMCEQCTLALCCHNKPNPATACLTPPVCPFCRSTIARLVVVKIESHEDTDVEAGDVSSSKLSKSKKARNLNEGSSNSFKGLSFGKMSGRSSGRIVAENEWIDKE 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0134 575 MobiDBLite consensus disorder prediction 522 538 - -
Lele32g0134 575 ProSiteProfiles Ankyrin repeat profile. 290 322 IPR002110 GO:0005515
Lele32g0134 575 ProSiteProfiles Ankyrin repeat region circular profile. 290 315 - -
Lele32g0134 575 ProSiteProfiles Ankyrin repeat region circular profile. 211 238 - -
Lele32g0134 575 ProSiteProfiles Ankyrin repeat profile. 211 243 IPR002110 GO:0005515
Lele32g0134 575 MobiDBLite consensus disorder prediction 522 575 - -
Lele32g0134 575 Gene3D - 278 383 IPR036770 -
Lele32g0134 575 ProSiteProfiles Ankyrin repeat profile. 178 210 IPR002110 GO:0005515
Lele32g0134 575 Pfam Ankyrin repeats (3 copies) 216 315 IPR002110 GO:0005515
Lele32g0134 575 ProSiteProfiles Zinc finger RING-type profile. 454 503 IPR001841 -
Lele32g0134 575 SUPERFAMILY Ankyrin repeat 148 383 IPR036770 -
Lele32g0134 575 Pfam Ankyrin repeats (many copies) 328 365 IPR002110 GO:0005515
Lele32g0134 575 Pfam Ankyrin repeat 180 207 IPR002110 GO:0005515
Lele32g0134 575 ProSiteProfiles Ankyrin repeat region circular profile. 327 353 - -
Lele32g0134 575 SMART ANK_2a 245 275 IPR002110 GO:0005515
Lele32g0134 575 SMART ANK_2a 211 240 IPR002110 GO:0005515
Lele32g0134 575 SMART ANK_2a 327 356 IPR002110 GO:0005515
Lele32g0134 575 SMART ANK_2a 178 207 IPR002110 GO:0005515
Lele32g0134 575 SMART ANK_2a 290 319 IPR002110 GO:0005515
Lele32g0134 575 SMART ANK_2a 143 172 IPR002110 GO:0005515
Lele32g0134 575 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 284 380 - -
Lele32g0134 575 MobiDBLite consensus disorder prediction 1 80 - -
Lele32g0134 575 MobiDBLite consensus disorder prediction 38 66 - -
Lele32g0134 575 MobiDBLite consensus disorder prediction 539 555 - -
Lele32g0134 575 SUPERFAMILY RING/U-box 448 508 - -
Lele32g0134 575 ProSiteProfiles Ankyrin repeat region circular profile. 178 210 - -
Lele32g0134 575 Gene3D - 142 277 IPR036770 -
Lele32g0134 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 521 IPR013083 -
Lele32g0134 575 ProSiteProfiles Ankyrin repeat profile. 327 359 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0134 Lele-ChrLele32 755348 763045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0134 104 344 Miscellaneous Gene Families AT5G02620 26.400 1.96e-15 77.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1242 11 19449257 19453581 Lele32g0134 32 755348 763045 CCT
Lele12g0080 12 696548 699672 Lele32g0134 32 755348 763045 CCT
Lele29g0144 29 786200 789225 Lele32g0134 32 755348 763045 hybridization
Lele30g1262 30 15217053 15224271 Lele32g0134 32 755348 763045 hybridization