Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1262 ATGGCGGAGGGTGGAGGCAATGATGGGGCCGTCCCCAGTTACAAGAGGAGCGAATCTCATGGTCGCCTCCACGTGGGGCCCCGCCATTCGAGCTCCTCAGTGAGGCGGCGCAGAAGCTTCAGTTTCTACTTATATCTACCCTGGCCTTTTGCATTTGTATTTATGGATGTACTTGGAATTCAAGGTCCTGTATCTCGGTCATTCCGCATAAGTGGAGATGAGGAATTAGGGATGATTTGGCAGTACTTCCCAGGTCTCAACGCCACAAGGGTGCATTATTGTGTGAGAATGGTAAATGGGAGGATTGTTATATTCCATAGTATATGTATAGACATAAATACAAATGGTGGATATCAACAAAAAGATACGGGGAATCGTAGCTTGGTGAGGAATCTGACCGCTGCCGGACGTCAGTCTACGATCGAGGCCACCTTCTCTGGGGGAGGTGGCACTGGCTTGAGGTGTGGCACCTCTCTGAAGGGGAAGATATACCAAACAGAGAAAGGGATGGGCCAAGGTCTGAGCTGCGTGGGGAGCCATGAACATGGCCTCTTCACTGCGGTACAGCATGGAGATATCGCCACCGTCAGAAATCTCTTGCGGAGAGACCCAACTATTTTGCACCACACTACTGTCTACGATCGCCATTCTGCTCTTCATATAGCCGCTGCTAATGGCCGGATCGAGATTCTGTCTATGCTGTTAGATGGATCTGTTAATCCAGATGTATTGAATCGTCAAAAGCAGACTCCGCTCATGTTGGCTGCAATGAACGGAAAGATCGCCTGTGTGAAAAAACTCCTTGAAGTTGGAGCTAATGTATTGATGTTTGATTCGCTTTACGGTAGAACCTGCCTGCACTACGCAGCTTACTATGGTCACTCTTCTTGCCTTGAAGCAATTCTTTCTGCGGCACAATCTAGTCCAGTAGCCGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTAGGGACGGTAGAGGAGCGACGCCATTACACTTGGCTGCCCGTCAGAGACGGCCCCAATGTGTGCATATCCTATTAGACAATGGAGCTCTTGTCTGTGCTTCGACAGGCGGATATGGCTGTCCTGGGAGCACTCCTCTTCATTTAGCTGCCAGAGGGGGATCTCTGGCTTGCATCCGGGAACTGTTGGCATGGGGTGCAGATCGTATTCAACGGGATGCTTCAGGGCGGATACCATATGTAGTTGCTCTGAAGCACAAGCATGGAGCATGTGCAGCATTGTTAAATCCTACATCTGCCGAACCCCTTGTGTGGCCTTCACCTTTGAAGTTCATCAGTGAACTTAATCCAGATGCCAAAGCATTATTAGAACGGGCCTTGATGGACGCAAACAGGGAAAGGGAGAAAAATATATTGAAAGGAAGCTCTTACTCTCTTCCATCTCCATCACATTCTGATAATGGGGTAGATGACAGTATCTCTGAGGCCAGTGAGACGGAACTGTGCTGCATCTGCTTTGAGCAGGTGTGCACAATTGAAGTCCAGAACTGTGGCCACCAGATGTGTGCACAATGCACTTTAGCCCTCTGTTGCCACAACAAGCCTAATCCTGCTACTGCTTGCCTTACTCCTCCTGTTTGTCCATTTTGCCGAAGCACCATAGCTAGACTGGTGGTTGTGAAGATCGAGAGTCACGAGGACACAGATGTAGAAGCTGGGGATGTCAGTTCTTCAAAGTTAAGCAAGTCAAAGAAAGCCCGAAACTTGAACGAAGGCAGCAGCAACAGCTTCAAGGGACTATCATTAGGAAAGATGAGCGGACGCAGCTCTGGAAGGATTGCTGCGGAAAATGAGTGGGTTGATAAAGAGTGA 1836 0.4902 MAEGGGNDGAVPSYKRSESHGRLHVGPRHSSSSVRRRRSFSFYLYLPWPFAFVFMDVLGIQGPVSRSFRISGDEELGMIWQYFPGLNATRVHYCVRMVNGRIVIFHSICIDINTNGGYQQKDTGNRSLVRNLTAAGRQSTIEATFSGGGGTGLRCGTSLKGKIYQTEKGMGQGLSCVGSHEHGLFTAVQHGDIATVRNLLRRDPTILHHTTVYDRHSALHIAAANGRIEILSMLLDGSVNPDVLNRQKQTPLMLAAMNGKIACVKKLLEVGANVLMFDSLYGRTCLHYAAYYGHSSCLEAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPQCVHILLDNGALVCASTGGYGCPGSTPLHLAARGGSLACIRELLAWGADRIQRDASGRIPYVVALKHKHGACAALLNPTSAEPLVWPSPLKFISELNPDAKALLERALMDANREREKNILKGSSYSLPSPSHSDNGVDDSISEASETELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTIARLVVVKIESHEDTDVEAGDVSSSKLSKSKKARNLNEGSSNSFKGLSLGKMSGRSSGRIAAENEWVDKE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1262 611 Pfam Ankyrin repeats (3 copies) 252 352 IPR002110 GO:0005515
Lele30g1262 611 MobiDBLite consensus disorder prediction 1 30 - -
Lele30g1262 611 ProSiteProfiles Zinc finger RING-type profile. 490 539 IPR001841 -
Lele30g1262 611 MobiDBLite consensus disorder prediction 558 574 - -
Lele30g1262 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 557 IPR013083 -
Lele30g1262 611 Gene3D - 178 310 IPR036770 -
Lele30g1262 611 ProSiteProfiles Ankyrin repeat profile. 247 279 IPR002110 GO:0005515
Lele30g1262 611 Gene3D - 311 419 IPR036770 -
Lele30g1262 611 MobiDBLite consensus disorder prediction 558 611 - -
Lele30g1262 611 Pfam Ankyrin repeat 364 394 IPR002110 GO:0005515
Lele30g1262 611 ProSiteProfiles Ankyrin repeat region circular profile. 326 351 - -
Lele30g1262 611 ProSiteProfiles Ankyrin repeat region circular profile. 214 246 - -
Lele30g1262 611 ProSiteProfiles Ankyrin repeat profile. 363 395 IPR002110 GO:0005515
Lele30g1262 611 SUPERFAMILY RING/U-box 484 544 - -
Lele30g1262 611 SUPERFAMILY Ankyrin repeat 184 419 IPR036770 -
Lele30g1262 611 ProSiteProfiles Ankyrin repeat profile. 214 246 IPR002110 GO:0005515
Lele30g1262 611 ProSiteProfiles Ankyrin repeat region circular profile. 363 389 - -
Lele30g1262 611 PANTHER HOMEOBOX PROTEIN WARIAI 191 548 - -
Lele30g1262 611 SMART ANK_2a 214 243 IPR002110 GO:0005515
Lele30g1262 611 SMART ANK_2a 326 355 IPR002110 GO:0005515
Lele30g1262 611 SMART ANK_2a 179 208 IPR002110 GO:0005515
Lele30g1262 611 SMART ANK_2a 247 276 IPR002110 GO:0005515
Lele30g1262 611 SMART ANK_2a 281 311 IPR002110 GO:0005515
Lele30g1262 611 SMART ANK_2a 363 392 IPR002110 GO:0005515
Lele30g1262 611 MobiDBLite consensus disorder prediction 575 591 - -
Lele30g1262 611 ProSiteProfiles Ankyrin repeat region circular profile. 247 274 - -
Lele30g1262 611 ProSiteProfiles Ankyrin repeat profile. 326 358 IPR002110 GO:0005515
Lele30g1262 611 Pfam Ankyrin repeat 216 242 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1262 Lele-ChrLele30 15217053 15224271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1262 205 416 Miscellaneous Gene Families AT5G02620 27.727 3.22e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1242 11 19449257 19453581 Lele30g1262 30 15217053 15224271 CCT
Lele12g0080 12 696548 699672 Lele30g1262 30 15217053 15224271 CCT
Lele30g1262 30 15217053 15224271 Lele31g1408 31 19773107 19776547 hybridization
Lele30g1262 30 15217053 15224271 Lele32g0134 32 755348 763045 hybridization