Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1242 ATGACGACCCAAAAGCTAAGACATTATGGCATTAGTCCAAATGTAACATCATTCAGATCATCAGATGCATTGAGCGAACTCCACACTCATGCCGCAGCAGTACTCGCATTCTAAGCCTTGAAAATGGCGACAAATTCTTCTAATGGAGAGCATCGAACAACAACAGAGACAACACAGACAACAAAGCCACCTCCCTTGCCTTCGCCCTTGCGCTTTTCCAAGTTCTTTCAGCCCAACATGAGAATTCTGGTCACTGGAGGAGCTGGATTCATTGGCTCTCACTTAGTTGACAGATTAATGCAGAATGAGAAAAATGAGGTTGTTGTTGCTGACAACTTCTTCACTGGATCCAAGGATAACCTTAGAAAATGGATTGGTCATCCTAGATTTGAGTTGATTCGTCATGATGTGACGGAGCAATTGTTTATTGAGGTTGATCAGATCTACCATCTTGCTTGTCCTGCTTCTCCGATTTTCTACAAATATAATCCGGTGAAGACTATAAAGACAAATGTGATAGGAACTCTGAACATGCTTGGGCTTGCAAAAAGAGTGGGAGCAAGGATTTTGCTAACATCTACTTCAGAAGTATATGGGGATCCTCTTGTGCATCCTCAACCAGAAACTTATTGGGGCAATGTGAACCCTATTGGAGTTCGTAGTTGCTATGATGAGGGAAAGCGTGTGGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATACGCATTGCCAGAATCTTCAACACATATGGACCACGCATGAATATTGATGATGGGCGAGTTGTCAGCAACTTTATTGCTCAAGCACTTCGTGGGGAGCCCCTGACTGTACAAGTTCCCGGAACACAAACTCGTAGCTTCTGCTATGTCTCTGATATGGTCGATGGCCTTATCCGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAATCCAGGTGAATTTACGATGGCTGAACTTGCTGAGACAGTGAAGGAGCTTATTAATCCTAGCGTGGAGATAAAGATGGTGGAAAACACTCCTGATGATCCTCGACAGAGAAAACCAGACATAACAAAGGCGAAGGAATTGTTAGGGTGGGAACCGAAGGTCAAGCTGAGAGATGGGCTTCCTCTAATGGAAGAGGATTTCCGTCTCAGGCTTGGAGTTGCCAAAAAGAATTAA 1182 0.4374 MTTQKLRHYGISPNVTSFRSSDALSELHTHAAAVLAFXALKMATNSSNGEHRTTTETTQTTKPPPLPSPLRFSKFFQPNMRILVTGGAGFIGSHLVDRLMQNEKNEVVVADNFFTGSKDNLRKWIGHPRFELIRHDVTEQLFIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMAELAETVKELINPSVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGVAKKN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1242 393 Gene3D - 79 386 - -
Lele11g1242 393 MobiDBLite consensus disorder prediction 46 61 - -
Lele11g1242 393 FunFam UDP-glucuronic acid decarboxylase 6 79 388 - -
Lele11g1242 393 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 46 388 IPR044516 GO:0042732|GO:0048040|GO:0070403
Lele11g1242 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 75 384 IPR036291 -
Lele11g1242 393 Pfam GDP-mannose 4,6 dehydratase 83 377 IPR016040 -
Lele11g1242 393 MobiDBLite consensus disorder prediction 46 68 - -
Lele11g1242 393 CDD UGD_SDR_e 80 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1242 Lele-ChrLele11 19449257 19453581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1242 82 392 Miscellaneous Gene Families AT1G02000 24.277 9.96e-16 76.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1242 11 19449257 19453581 Lele29g0144 29 786200 789225 CCT
Lele11g1242 11 19449257 19453581 Lele30g1262 30 15217053 15224271 CCT
Lele11g1242 11 19449257 19453581 Lele31g1408 31 19773107 19776547 CCT
Lele11g1242 11 19449257 19453581 Lele32g0134 32 755348 763045 CCT
Lele10g1216 10 23277849 23280701 Lele11g1242 11 19449257 19453581 hybridization