Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0144 ATGGATAAATCACAGACAGGGGACCATATTAATAGGATGAGTAAAATTGTTCTTAGAAAAATGAGGCAATCTCAACCGTTGATAGCGATCGAGGCCACCTTCTCTGGGGGAGGTGGCACTGGCTTGAGGTGTGGCACCTCTCTGAAGGAGAAGATATACCAAAGAGAGAAAAGGATGGGCCAAGGTCTGAGCTGCGCGGGGAGCCATGAACATGGCCTCTTCACTGCGGTACAGCACGGAGATATCGCCACTGTCACAAATCTCTTGCTTAGAGACCCAACTATTGTGCACCACACTACCGTCTACGATCGCCATTCTGCCCTTCATATAGCCGCTGCTAATGGCCAGATCGAGATTCTGTCTATGCTGTTAGATGGATCTGTTAATCCAGACGCCTTGAATCGTCAAAAGCAGACCCCGCTCATGTTGGCTGCAATGAACGGAAAGATCGCCTGCGTCAAAAAACTCCTTGAAGTTGGAGCTAATGTATTGATGTTTGATTCGCTTTACGGTAGAACCTGCCTGCACTACGCAGCCTACTATGGTCATTCTTCTTGCCTTGAAGCAATTCTTTCTGCGGCACAATCTAGTCCAGTAGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTAGGGATGGTAGAGGAGCGACGCCATTGCACTTGGCTGCCCGCCAGAGACGGCCTCAATGTGTGCATATTCTATTAGACAATGGAGCTCTTGTCTGTGCCTCAACAGGCGGATATGGCTGTCCTGGGAGCACTCCTCTTCATTTAGCTGCCAGAGGGGGATCTCTGGATTGCATCCGTGAACTGTTGGCATGGGGTGCAGATCGTCTCCAACGGGATGCTTCAGGGCGGATACCATATGTAGTTGCTCTGAAGCACAAGCATGGAGCATGTGCAGCATTGTTAAATCCGACATCTTCTGAACCTCTTGTCTGGCCTTCACCTTTGAAGTTCATCAGTGAACTTAATCCAGATGCCAAAGCGTTATTAGAACGGGCCTTGATGGACGCAAACAGGGAAAGAGAGAAAAATATATTGAAAGGAAGCGCTTACTCTCTTCCATCTCCATCACATTCTGATAATGGGGTAGATGACAGTATCTCTGAGGCCAGCGAGATGGAACTGTGCTGCATCTGCTTTGAGCAGGTGTGCACAATTGAAGTCCAGAACTGTGGCCACCAGATGTGTGCACAATGCACTTTAGCCCTCTGTTGCCACAACAAGCCTAATCCTGCTACTGCTTGCCTTACTCCTCCAGTCTGCCCATTTTGCCGAAGCACCATAGCCAGACTGGCGGTTGTGAAGATCGAGAGTCACGAGGACACAGATGTAGAAGCAGGGGATGTCAGTTCTTCAAAGTTAAGCAAGTCAAAGAAAGCCCGAAACTTGAACGAAGGCAGCAGTAACAGCTTCAAGGGACTATCATTCGGAAAGATGAGCGGACGCAGCTCTGGAAGGATTGCTGCGAAAAATGAGTCGGTTGATAAAGAGTGA 1503 0.4877 MDKSQTGDHINRMSKIVLRKMRQSQPLIAIEATFSGGGGTGLRCGTSLKEKIYQREKRMGQGLSCAGSHEHGLFTAVQHGDIATVTNLLLRDPTIVHHTTVYDRHSALHIAAANGQIEILSMLLDGSVNPDALNRQKQTPLMLAAMNGKIACVKKLLEVGANVLMFDSLYGRTCLHYAAYYGHSSCLEAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPQCVHILLDNGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHKHGACAALLNPTSSEPLVWPSPLKFISELNPDAKALLERALMDANREREKNILKGSAYSLPSPSHSDNGVDDSISEASEMELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTIARLAVVKIESHEDTDVEAGDVSSSKLSKSKKARNLNEGSSNSFKGLSFGKMSGRSSGRIAAKNESVDKE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0144 500 ProSiteProfiles Ankyrin repeat profile. 252 284 IPR002110 GO:0005515
Lele29g0144 500 MobiDBLite consensus disorder prediction 445 463 - -
Lele29g0144 500 ProSiteProfiles Zinc finger RING-type profile. 379 428 IPR001841 -
Lele29g0144 500 MobiDBLite consensus disorder prediction 445 500 - -
Lele29g0144 500 ProSiteProfiles Ankyrin repeat region circular profile. 252 278 - -
Lele29g0144 500 SMART ANK_2a 215 244 IPR002110 GO:0005515
Lele29g0144 500 SMART ANK_2a 252 281 IPR002110 GO:0005515
Lele29g0144 500 SMART ANK_2a 136 165 IPR002110 GO:0005515
Lele29g0144 500 SMART ANK_2a 68 97 IPR002110 GO:0005515
Lele29g0144 500 SMART ANK_2a 103 132 IPR002110 GO:0005515
Lele29g0144 500 SMART ANK_2a 170 200 IPR002110 GO:0005515
Lele29g0144 500 ProSiteProfiles Ankyrin repeat profile. 103 135 IPR002110 GO:0005515
Lele29g0144 500 ProSiteProfiles Ankyrin repeat profile. 215 247 IPR002110 GO:0005515
Lele29g0144 500 ProSiteProfiles Ankyrin repeat profile. 136 168 IPR002110 GO:0005515
Lele29g0144 500 Pfam Ankyrin repeats (many copies) 253 290 IPR002110 GO:0005515
Lele29g0144 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 443 IPR013083 -
Lele29g0144 500 Gene3D - 46 170 IPR036770 -
Lele29g0144 500 ProSiteProfiles Ankyrin repeat region circular profile. 136 163 - -
Lele29g0144 500 MobiDBLite consensus disorder prediction 464 480 - -
Lele29g0144 500 Gene3D - 171 361 IPR036770 -
Lele29g0144 500 PANTHER HOMEOBOX PROTEIN WARIAI 81 437 - -
Lele29g0144 500 SUPERFAMILY RING/U-box 378 432 - -
Lele29g0144 500 Pfam Ankyrin repeats (3 copies) 73 166 IPR002110 GO:0005515
Lele29g0144 500 Pfam Ankyrin repeats (3 copies) 170 241 IPR002110 GO:0005515
Lele29g0144 500 ProSiteProfiles Ankyrin repeat region circular profile. 103 135 - -
Lele29g0144 500 SUPERFAMILY Ankyrin repeat 73 306 IPR036770 -
Lele29g0144 500 ProSiteProfiles Ankyrin repeat region circular profile. 215 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0144 Lele-ChrLele29 786200 789225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0144 94 305 Miscellaneous Gene Families AT5G02620 27.727 4.29e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1242 11 19449257 19453581 Lele29g0144 29 786200 789225 CCT
Lele12g0080 12 696548 699672 Lele29g0144 29 786200 789225 CCT
Lele29g0144 29 786200 789225 Lele31g1408 31 19773107 19776547 hybridization
Lele29g0144 29 786200 789225 Lele32g0134 32 755348 763045 hybridization