Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0080 ATGGCAACAAATTCTTCTAATGGAGAGCACCGAACCACAACAGCGACAACACAGACAAAAAAGCCACCTCCCTTGCCTTCTCCCTTGCGCTTTTCCAAGTTCTTTCAGCCCAACATGAGAATTCTGGTCACTGGAGGAGCTGGATTCATTGGCTCTCACTTAGTTGACAGATTAATGCAGAATGAGAAAAATGAGGTAGTTGTTGCTGACAACTTCTTCACTGGATCCAAGGATAACCTTAGAAAATGGATTGGTCATCCTAGATTTGAGTTGATTCGTCATGATGTGACGGAGCAATTGTTTATTGAGGTTGATCAGATCTACCATCTTGCTTGTCCTGCTTCTCCGATTTTCTACAAGTATAATCCCGTGAAGACTATAAAGACAAATGTGATAGGAACACTGAACATGCTTGGGCTTGCAAAAAGAGTGGGAGCAAGGATTTTGCTAACTTCTACTTCAGAAGTATATGGGGATCCTCTTGTGCATCCACAGCCAGAAAGTTACTGGGGCAATGTGAACCCTATTGGAGTTCGGAGTTGCTATGATGAGGGAAAGCGTGTGGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGGATAGAAATACGCATTGCCAGAATCTTCAACACATATGGACCACGCATGAATATTGATGATGGGCGAGTTGTGAGCAACTTTATTGCTCAAGCAATTCGTGGGGAGCCCCTGACTGTACAAGTTCCCGGGACACAAACTCGTAGCTTCTGTTATGTCTCTGATATGGTCGATGGCCTTATCCGTCTAATGGAAGGAGAAAACACTGGTCCAATCAACATTGGGAATCCAGGTGAATTTACTATGACTGAACTTGCTGAGACAGTGAAGGAGCTTATTAATCCAAGTGTGGAGATAAAGATGGTGGAAAACACTCCTGATGATCCTCGACAGAGAAAACCAGACATAACAAAAGCGAATGAATTGTTGGGGTGGGAACCAAAGGTCAAGCTGCGAGATGGTCTTCCTCTAATGGAAGAGGATTTCCGTCTCAGGCTTGGAGTTGCCAACAAGAATTAA 1059 0.4372 MATNSSNGEHRTTTATTQTKKPPPLPSPLRFSKFFQPNMRILVTGGAGFIGSHLVDRLMQNEKNEVVVADNFFTGSKDNLRKWIGHPRFELIRHDVTEQLFIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMTELAETVKELINPSVEIKMVENTPDDPRQRKPDITKANELLGWEPKVKLRDGLPLMEEDFRLRLGVANKN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0080 352 Coils Coil 351 352 - -
Lele12g0080 352 Gene3D - 38 345 - -
Lele12g0080 352 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 24 347 IPR044516 GO:0042732|GO:0048040|GO:0070403
Lele12g0080 352 FunFam UDP-glucuronic acid decarboxylase 6 38 347 - -
Lele12g0080 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 343 IPR036291 -
Lele12g0080 352 CDD UGD_SDR_e 39 343 - -
Lele12g0080 352 Pfam GDP-mannose 4,6 dehydratase 42 336 IPR016040 -
Lele12g0080 352 MobiDBLite consensus disorder prediction 1 27 - -
Lele12g0080 352 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0080 Lele-ChrLele12 696548 699672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0080 39 335 Miscellaneous Gene Families AT1G02000 24.096 5.44e-16 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0080 12 696548 699672 Lele29g0144 29 786200 789225 CCT
Lele12g0080 12 696548 699672 Lele30g1262 30 15217053 15224271 CCT
Lele12g0080 12 696548 699672 Lele31g1408 31 19773107 19776547 CCT
Lele12g0080 12 696548 699672 Lele32g0134 32 755348 763045 CCT
Lele10g1216 10 23277849 23280701 Lele12g0080 12 696548 699672 hybridization