LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele31g1302	ATGTTTTGGAAGCTCCCATCTACCTCCTCTCCCGTCGAGGCAATTTTGGATAAAGAGAATTTCGCTTTGGAAGAACTCCTGGATGAAGAAGAAATTATCCAAGAATGCAAGGCCTTAAACAGTCGTCTCATTAACTTCCTGAGGGATAGAGCTCAAGTGGAGCAATTACTACGCTACATTATTGAAGAGCCACCAGAAAATGCTGAAAGCAAACGGACCTTCAAGTTTCCATTCATTGCTTGTGAGGTTTTCACATGTGAAATTGATGTTATTTTGAAGACCTTGGTGGAGGAAGAAGAGTTGATGAACTTATTATTCTCCTTCTTAGAGCCTGATCGTTCTCATGGTTCCTTGCTAGCTGGGTATTTTAGCAAGGTTGTTGTTTGCCTAATGATTCGGAAGACAGTGCCGCTGATGAATTATGTTCAAGCCCATCAGAATGTTTTTGGCCAACTGGTTGATTTGATAGGAATTACATCTATCATGGAGGTTTTGGTTCGCTTAGTAGGTGCTGATGATCATGTGTATCCCAATTTTATAGATGTGATGCAATGGTTGGCTGAGAGCAACCTGCTAGAGATGATTGTTGATAAATTAACTCCTTCTAGTCCTCCTGAAGTTCATGCAAATGCAGCTGAAACCTTATGTACCATAACTCGAAATTCCTCATCTGCTTTGGCAATTAAGCTTTCGAGTCCAAGTTTTGTTGTAAGAATTATGGACCATGCCCTGAAAGATTCACAGTCAAATTCTAGCCTTGTTCACCCACTGTCAGTGTGTATTTCTTTGTTGAATCCAAAAAGATCAACATTTCCACCTCCCCTTGTCCCTTCGTTCCGAAGTCAACAATTATACGAGGTTTCAACTCCAGTTAACCCAGATACCATTGGTGCAATGCTCCCAAAACTTGGTGACTTACTTATGGTTTTAAATGTGTCGACGGATGGTAAGGTTTTGCCTACAACATATGGAGAATTGAGGCCTCCACTTGGGAAGCATCGGTTAAAGATTGTCGAGTTTATAGCAGTGCTTCTGAGAACTGGCGGTGAAGTGGCTGAAAAGGAATTGGTCAGCTCAGGAATGATCCGACGAGTCATTGATCTTTTCTTTGAGTATCCATATAACAACTCGTTGCACCATCATGTAGAAAGTGTCATATTAATTTGTTTGGAGCGCAAAAGTGATGTCATTATTGATCACCTTCTTCAAGAGTGTGATTTAATTGGAAAATTTCTTCAAGCGGATAAACATCCTATTCTTTCTGGTATTGATAATCAGCCAACTGTACCTGCTGCTGGAAAACAGGCACCACGGGCAGGCAACATTGGACATATTACTCGCATTGCTAATAAACTTATTCCATTGGCACATAATCAAAACCACATCCAAGCATATATTCAGGAAAATAGTGAGTGGAATCAATGGCAAACTATTGTTCTGCAGGAGCGTAACATGATTGAAAATGTTCACCGTTGGGCTTGTGGACGGCCTAGTGCATTACACGATAGGATGAGGGATAGTGATGAAGATGATCTTCATGACAGAGACTATGACGTTGCAGCTTTAGCAAATAATTTGAACCACCCTTTTAAATATAATATTTATGGAACCGAGGAAAATGAAGAGGACCAAGGAGGTCTTGATCGTGATGCTGAGGATGTCTACTTTGATGATGACTCAGCAGAAGTTGTCATATCATCCTTAAGACTTGGTGATGATCAGGGGAGTAGTCTGTTCACAAACTCCAACTGGTTTGCGTTCCAAGATGACAGAATTGGTGATGCAGCTGGGGGCACATCATCCTCTGAGATGATGGATGATATTAACTTGACCGGGGCTGTAAATGGTTATAACAACAGTAGTGACGACGAAGTGGTGATTGGAGAGGATGAAGGTTTGGCTGAAAACAAAAATACCATTAATGGCACATCGAATTCAAGCACAAGTTTCTTCAGTGGTTTAACTGCCTTTGATTCCATGAATGGTGGCATTTTGAATTTGGAAGGTGAGAAGGCAAGTGTATCCCATGATATGGGATTCTTTGGGTTTGAAACGCCAGACAATGAGGACTTGTTTGGGGATAGGCCGCTACCTGGGTGGGTGGGATGGGGTGAACCATCAGATATACAAGTGGCCGGTTCAAGCACGAACCCCTTTTTGGATTATGATGAGTCCGATGTCAATTCATCCGCCAAACCTCAATTAGGTAGCCCTAATCCTACTGCAAATGGAGTTGTACTTTCAAATGGGTCTCCCACTCGAGATGTTAGCAAGGGGGATGGTGACTCGAATCTAAAAACAGCAGCAGTACCCTCCCTATTTGAAGAGGATGTTGAATTTGTAGGCGTGGAATTGGAAGGTACTGAGAAGGCTATGGAACAGGCCCTAAAAGAAGGGATAGTTGGGGAAGCGGGACCTTTGAAAAAGAACCCATCCCAAAAGGCGGCGGAGAGAGAGAATTCTGAAGAAGGTGGACCTGACCGTATGAAGGAATTCAATGACGCAAATTACTGGAGGGTGGACCAAGAGGTTGCGGTTCTGGAATGA	2547	0.4252	MFWKLPSTSSPVEAILDKENFALEELLDEEEIIQECKALNSRLINFLRDRAQVEQLLRYIIEEPPENAESKRTFKFPFIACEVFTCEIDVILKTLVEEEELMNLLFSFLEPDRSHGSLLAGYFSKVVVCLMIRKTVPLMNYVQAHQNVFGQLVDLIGITSIMEVLVRLVGADDHVYPNFIDVMQWLAESNLLEMIVDKLTPSSPPEVHANAAETLCTITRNSSSALAIKLSSPSFVVRIMDHALKDSQSNSSLVHPLSVCISLLNPKRSTFPPPLVPSFRSQQLYEVSTPVNPDTIGAMLPKLGDLLMVLNVSTDGKVLPTTYGELRPPLGKHRLKIVEFIAVLLRTGGEVAEKELVSSGMIRRVIDLFFEYPYNNSLHHHVESVILICLERKSDVIIDHLLQECDLIGKFLQADKHPILSGIDNQPTVPAAGKQAPRAGNIGHITRIANKLIPLAHNQNHIQAYIQENSEWNQWQTIVLQERNMIENVHRWACGRPSALHDRMRDSDEDDLHDRDYDVAALANNLNHPFKYNIYGTEENEEDQGGLDRDAEDVYFDDDSAEVVISSLRLGDDQGSSLFTNSNWFAFQDDRIGDAAGGTSSSEMMDDINLTGAVNGYNNSSDDEVVIGEDEGLAENKNTINGTSNSSTSFFSGLTAFDSMNGGILNLEGEKASVSHDMGFFGFETPDNEDLFGDRPLPGWVGWGEPSDIQVAGSSTNPFLDYDESDVNSSAKPQLGSPNPTANGVVLSNGSPTRDVSKGDGDSNLKTAAVPSLFEEDVEFVGVELEGTEKAMEQALKEGIVGEAGPLKKNPSQKAAERENSEEGGPDRMKEFNDANYWRVDQEVAVLE	848

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele31g1302	848	MobiDBLite	consensus disorder prediction	712	758	-	-
	Lele31g1302	848	MobiDBLite	consensus disorder prediction	799	835	-	-
	Lele31g1302	848	MobiDBLite	consensus disorder prediction	812	835	-	-
	Lele31g1302	848	Pfam	SIT4 phosphatase-associated protein	129	348	IPR007587	GO:0019903\|GO:0043666
	Lele31g1302	848	Pfam	SIT4 phosphatase-associated protein	354	489	IPR007587	GO:0019903\|GO:0043666
	Lele31g1302	848	PANTHER	SIT4 YEAST -ASSOCIATING PROTEIN-RELATED	1	817	IPR007587	GO:0019903\|GO:0043666
	Lele31g1302	848	MobiDBLite	consensus disorder prediction	712	764	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele31g1302	Lele-ChrLele31	19121019	19128317	Dispersed/Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele09g1165	09	20740357	20745753	Lele31g1302	31	19121019	19128317	CCT
	Lele10g1139	10	22715952	22718214	Lele31g1302	31	19121019	19128317	CCT
	Lele29g0247	29	1437227	1444473	Lele31g1302	31	19121019	19128317	hybridization
	Lele30g1162	30	14542308	14553006	Lele31g1302	31	19121019	19128317	hybridization