Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0662 ATGAATCTAAACAAGAGCAAGCTTATATTTTTCATCTCTTTGGTTCTGGGAATGAGGAAAGATGACCAGAAACTACATCAGGGAGGTGCAATGCCTCGGTCTGGGCGAACCAATGGATTGATTCCGAGCTCATTTCGTGCTCTCTCAAGCTACCTGAGGGTCGTTTCCTCTGGTGCTTCCACCGTTGCGCGGTCTGCAGCATCGGTTGCTTCTTCGATTCTTGATAGGGATAGTGACGCTGACCATGATCAGGTTATCTGGGCTGATTTTGACAAGTTAGAGTTGGAAGGAGATGTCACTCGGCAAGTTCTTCTTCTAGGCTATCGAACTGGGTTCCAGGTTTGGGATGTTGAAGATTCCAAAAATGTCCAAGACCTAGCTTCCAGACATGACGGTCCAGTTTCTTTTATGCAAATGCTATCAAAACCAATTGCATCAAATAGCTCAGAAGATAAGTTTGCAGACAGCCGTCCACTGTTGGTTGTCTGTACTGATGGAATTTATGCTGGAGGCAGTAACAATCAAGATGGTTTTGTCTCCCCTTGCAATGGGAGCACTTTAAATGGCCATGACCAAGTGAATGGCATTTATCTGCCAACTACTGTTCAGTTTTATTCTTTGAGATCCCAATCATTTGTACATGTATTAAAGTTTAGATCAGCTATTTATTCTGTTAGGTGCAGTTCTCGTGTTGTTGCCGTTGCTCAATCCACTCAGATCCACTGTTTCAATGCCACTATGTTAGAAAGGGAATATACTCTGCTCACCAATCCAATTGTCATGAGCTGTCCTGTTTCCGGAGGCATAGGCTATGGACCACTGTCAGTGGGTCCTAGATGGCTGGCTTATAGCGGAAGCCCAGTTGTAGTCTCAAATTCTGGGCGTGTCAATCCTCAACATTTGACACCTTCTGCGGGCTTTCCTGGGTTTTCTTCGAATGGGAGCTTGGTTGCACACTATGCCACAGAGTCCAGCAAGCAACTTGCTGCGGGGATAGTCACACTCGGAGATATAGGGTATAAGAAGCTTTCTAGATACTGCTCTGAGCTACGACCTGATGGCAATGGTTCTTCATCATCCGTAAGCTCCATCTCAAAAGGCAACGGAATCAGTAATGGCCATTTGGGAGATTTGGGTAACATTGGAATGGTCATTGTCAGAGACATTGTCAGTAAAAGTGTTGTTGCTCAATTCAGAGCCCACAAAAGTCCTATATCAGCCTTATGCTTTGATCCTAGCGGCACTATTTTAGTGACTGCATCAGTTCAGGGGCATAATATTAATGTTTTTAAGATAATACCTGGACAATCTGACAGTTTGGCATCTGATGGCGGTCCTACTTATGTACATCTTTACAGGCTACAACGCGGCTTTACAAATGCAGTAATTCAAGATATCAGTTTCAGTGATGACAGTAACTGGATTATGATTAGTTCCTCAAGAGGTACTAGCCATTTGTTTGCCATAAATCCTCTAGGAGGATCTGTAAATATTCAGTCCTATGATCCAAGTTTTACATCGAAAAATGGTGGATTGGTTGTCATGACCGACCCAGCAGTTGGTTGGCCTACTAATTCGAGTTTACAAATTCCTAAACAACAAAGTCTGCATGCAACTGGGACGCCAATCACACTTTCTGTTGTATGCAGAATTAGAAATGGTAATAATGGCTGGAGAAGCACCGTAAGTGGCACAGCCGCTGCTGCAAGGGGTAGGACAAGCTCCCAGTCAGGAGTTATTGCTTCATCTTTTTGTAACGGCGAAGGGTGTGCTTTGCATGTTGATGGGAACTCTTTTAAGACAAAATATCACCTGTTGGTTTTTTCGTCTTCTGGTTCTATGATACAATATGCTCTGGGCACATCAATGGTTCAAGATTCAGTAGTTTCTGGATTGACCCAGGCACATGAATCTGCATTAGAGTTTGACACAAGATTGGTTGTTGAAGCTATTCAGAAATGGAATATAGGCCAGAGACACAATCGAAGAGAACGAGAAGATAATGTAGACATATATGGTGAAAATGGAACTTCGGATATGAACAAGATATATCCTGTAGAGATGAAGGATGAGAATATCAATAGCTCAAAACTCGAGAATGTAATCATGAAAGTGAATTCTCATCTTGAGAAGGAAGAGCATCATTTATATTTTTCAGAAGCAGAACTTCAGACCCACCAAGCTCAAACTCCATTGTGGTCAAAGCGAGAGATTTATTTTCATTCAATGGGGAAAGAGGAGGGCATCTTGAGTGAAGAAACTACTTCAGAAGGAGAAATTCAGATTGAAAGAATTCCTACACATGTAATTGAATTTAGGGCCAAGGACTTAGTTCCGATCTTCGACTATCTTCAGCCACGAAATTTCCAACAAAGAAGGACTCCTACTGCAAATAATGAAGTGGATGAACCACAGCTACACCTGAATTCTGGGATTAATGGAAAACACACAATATCAGAGAGAAGTAACTCAGATTCTACTGACTGGATGAGAAATTATGATGGTGGTGTTGTACGCAAGATAGATGGCGACATTGAAGGGGCGGAGTGGAGTGATCATCTGGGATTGCTAGAAACTAACGGCTTTGTAAATAAGAATGACAATGACACCATCGTTGAAGCCAATACTTGCCATGAGGTTGTAAATAATAGAGAGCACTCAAACATGGAGGCTCAACTCATGCCTGTAAATAGTGACTTAGAAGGCTTTAAAATGGAGAATCACTTTGAAGACGACAACTCGAAGTGA 2748 0.4236 MNLNKSKLIFFISLVLGMRKDDQKLHQGGAMPRSGRTNGLIPSSFRALSSYLRVVSSGASTVARSAASVASSILDRDSDADHDQVIWADFDKLELEGDVTRQVLLLGYRTGFQVWDVEDSKNVQDLASRHDGPVSFMQMLSKPIASNSSEDKFADSRPLLVVCTDGIYAGGSNNQDGFVSPCNGSTLNGHDQVNGIYLPTTVQFYSLRSQSFVHVLKFRSAIYSVRCSSRVVAVAQSTQIHCFNATMLEREYTLLTNPIVMSCPVSGGIGYGPLSVGPRWLAYSGSPVVVSNSGRVNPQHLTPSAGFPGFSSNGSLVAHYATESSKQLAAGIVTLGDIGYKKLSRYCSELRPDGNGSSSSVSSISKGNGISNGHLGDLGNIGMVIVRDIVSKSVVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIIPGQSDSLASDGGPTYVHLYRLQRGFTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNIQSYDPSFTSKNGGLVVMTDPAVGWPTNSSLQIPKQQSLHATGTPITLSVVCRIRNGNNGWRSTVSGTAAAARGRTSSQSGVIASSFCNGEGCALHVDGNSFKTKYHLLVFSSSGSMIQYALGTSMVQDSVVSGLTQAHESALEFDTRLVVEAIQKWNIGQRHNRREREDNVDIYGENGTSDMNKIYPVEMKDENINSSKLENVIMKVNSHLEKEEHHLYFSEAELQTHQAQTPLWSKREIYFHSMGKEEGILSEETTSEGEIQIERIPTHVIEFRAKDLVPIFDYLQPRNFQQRRTPTANNEVDEPQLHLNSGINGKHTISERSNSDSTDWMRNYDGGVVRKIDGDIEGAEWSDHLGLLETNGFVNKNDNDTIVEANTCHEVVNNREHSNMEAQLMPVNSDLEGFKMENHFEDDNSK 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0662 915 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 34 831 IPR045142 GO:0006914
Lele29g0662 915 SUPERFAMILY WD40 repeat-like 101 490 IPR036322 GO:0005515
Lele29g0662 915 SMART WD40_4 447 488 IPR001680 GO:0005515
Lele29g0662 915 SMART WD40_4 209 244 IPR001680 GO:0005515
Lele29g0662 915 SMART WD40_4 391 431 IPR001680 GO:0005515
Lele29g0662 915 Pfam WD domain, G-beta repeat 395 424 IPR001680 GO:0005515
Lele29g0662 915 FunFam Breast carcinoma-amplified sequence 3 310 540 - -
Lele29g0662 915 Pfam Breast carcinoma amplified sequence 3 540 779 IPR022175 -
Lele29g0662 915 Gene3D - 81 510 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0662 Lele-ChrLele29 4137765 4143962 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0768 11 7748408 7749582 Lele29g0662 29 4137765 4143962 CCT
Lele12g0570 12 14147818 14149472 Lele29g0662 29 4137765 4143962 CCT
Lele29g0662 29 4137765 4143962 Lele31g0874 31 16246260 16251496 hybridization
Lele29g0662 29 4137765 4143962 Lele32g0644 32 4019877 4025153 hybridization