Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0570 ATGCATGGCTCTAATCACAGTAGTTCAATAAGTAAGCTGAAAAGTTTCATGGCTGGGACAACAAGAACAAGAAAAACTGGTGCTTTTCTCTTGTGGGACTCCTCCAGGACCATCATAATAATGGCTACTTCTTCTAGGAGGATTGAAGTTCAAACAGAGAATCAAACTCCTCATAAATGGAGCATTTCTTTGGGAGAAGAGGTATTCAAGAGGTTCTTCAGCCAGGCTAATCCAACAGTACATAAAATTTTTGGTGATGGGTCACTTTTCAGTCCAATGTTGTTCGGCAAGTTCTTCGATCCTTCGGACGCCTTCCCCCTCTGGGAGTTCGAGTCGGATATCTTGTTATCTAACCTACGTAGCTCAGGACAAAGCACAGTGGACTGGGCTCAGACTGAACAAGGTTACATATTAAAGGCAGAATTACCAGGAACTGGGAGAAATAGCATTCAAGTGCATGTTGATAATGGGAAGATTGTGGAAATTAGTGGGCAGTGGAAGCAGCAGACAAAAGCAAGTGATTGGAGGTGTGGCCACTGGTGGGAATATGGATATGTAAGAAGGCTTGAGATGCCAGAGGATGCAGAATGGAGGAATATAGAGGCTCACTTATATAACGACGTATTCTTAGAGATACGAATACCGAAGAGGCCACCGGGCTGTGATCATCCTCAAGGGAAAGATGGAGCTTCAAAAAATGCAGAGTCAGTGTAA 714 0.437 MHGSNHSSSISKLKSFMAGTTRTRKTGAFLLWDSSRTIIIMATSSRRIEVQTENQTPHKWSISLGEEVFKRFFSQANPTVHKIFGDGSLFSPMLFGKFFDPSDAFPLWEFESDILLSNLRSSGQSTVDWAQTEQGYILKAELPGTGRNSIQVHVDNGKIVEISGQWKQQTKASDWRCGHWWEYGYVRRLEMPEDAEWRNIEAHLYNDVFLEIRIPKRPPGCDHPQGKDGASKNAESV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0570 237 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 118 233 IPR002068 -
Lele12g0570 237 SUPERFAMILY HSP20-like chaperones 92 219 IPR008978 -
Lele12g0570 237 MobiDBLite consensus disorder prediction 216 237 - -
Lele12g0570 237 Pfam Hsp20/alpha crystallin family 128 222 IPR002068 -
Lele12g0570 237 Gene3D - 67 225 IPR008978 -
Lele12g0570 237 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 43 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0570 Lele-ChrLele12 14147818 14149472 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0570 12 14147818 14149472 Lele29g0662 29 4137765 4143962 CCT
Lele12g0570 12 14147818 14149472 Lele30g0736 30 11834407 11839655 CCT
Lele12g0570 12 14147818 14149472 Lele31g0874 31 16246260 16251496 CCT
Lele12g0570 12 14147818 14149472 Lele32g0644 32 4019877 4025153 CCT
Lele12g0570 12 14147818 14149472 Lele12g0570 12 14147818 14149472 ECH
Lele09g0765 09 6018973 6020148 Lele12g0570 12 14147818 14149472 hybridization
Lele10g0695 10 5252749 5258504 Lele12g0570 12 14147818 14149472 hybridization