Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1738 ATGGATCCAATTGAAGCATGGCAAGAGCTTGGTTTTCGGGTCGGGTTCACCGGTCACAGTGGACACCTCCGAGTGGAACCGCTGTCGACAGTGGAGCGTTCCAACCCATTGAGTTCGCTTCCTGATTTCATTCTGCCACCTGCATTTCCGGAGGAGACTCCTGAATCTATAAAGAAGTATATTGAAGAGACATATCTCAGCCCTAGATTGGATCCCGATGAATTTTCACCCGAGAAAGTTGGGAGGCAGTGGGAATTTGACTGGTTTGACAGGGCTGAAGTGCCTCTGGATCCATCTTTTCCTCGGACTGTTGTGGTTCCTGTTTGGGAACCACCATTTCGACGCCAAAACAATGTTTCAGAGCAATCAAAGTGGGAGCCGAAATCTGAGGAGGTGGATGTTTCAGAATTGATGCTAGGAGATGAAGACTCTGGGCCATTACCTCGTGTCTCTGGATCTGCTAAGGACTTTGTAAGGGGAAGCATCAATAGTCGGCCTTTTCGTCCCGGAGGTTTGGATAAATCCCAAACTTTAAACAGAATTCTTCCAGAAGGTGCTTCTAATGGTGAATGGGTGCGTGAAATTTTGAATGGTGGCCCTCCTCAGACGATTCCTCCAGGCTTTAAACAAGGGTTGGACCTTGGAGAATTTAAGCCATATCCTTGCTCATGGAATGTTGACAAGGGTGCCAGTTCGCTTAAGAGCTCATCAGATGAAAAACTGAGTGAGTTGTCTCTACAGTTTGATGACTTATTTAAGAAGGCTTGGGAAGATGGCGTTACTCATGAACAAGAGGAAGATGGGCATTTATCAAAAGTGGAGTCTGTTATGCTGGAAGTTGAAGTTGATAAGGCTGAGGCATCTAGCAGTATGCATGAGGATGAATTTTCATTAGATGAGGTCTTGTCAACTAAATCAGAAGGATTAAAACCACTTTTAGATGCATCTAGTGATGGTGGACGGCAGCAAAAGGAGGCTTGGGCACGTCATGGAGGTAGCAAAGAAATCATAGATCACTTCCATGAACTTGTTCCTGATATGGCACTTCAGTTTCCCTTTGAATTGGATGCATTTCAGAAGGAGGCTATATATTATCTTGAGAAAGGGGAATCTGTTTTTGTTGCTGCTCACACATCAGCTGGAAAAACAGTAGTGGCAGAATATGCATTTGCTTTAGCATCAAAGCATTGCACTAGGGCTGTGTATACCGCTCCGATAAAAACAATCAGCAACCAGAAATATAGGGATTTCTGTGGGAAGTTTGATGTTGGGCTGCTTACAGGTGATGTAACCTTGAGGCCTGAGGCTTCTTGTCTCATCATGACCACAGAAATTTTAAGGTCCATGCTCTATCGAGGTGCAGATATTATTCGGGATATTGAATGGGTTATATTTGACGAAGTGCATTATGTCAATGATGCTGAAAGAGGTGTTGTTTGGGAAGAAGTAATTATAATGCTTCCAAGACACATCAATATCATCCTCCTTTCAGCCACGGTACCTAACACGGTTGAATTCGCTGATTGGATTGGTCGGACAAAACAAAAGGAAATTCGAGTTACAGGGACAACAAAAAGACCTGTCCCATTGGAGCACTGCCTGTTTTATTCTGGAGAACTTTACAAAATTTGTGAAAGTGAAACATTTCTGCCTCAGGGACTGAAAGCTGCTAAGGATGTGTTTAAGAAAAAGCGTTCACCTGCTGTTGGTGGTGGTTCTGGACGGTATTCGGGGACATCAGCAGGTCATGATGGTACTCAAGTTCAAAAACGTGAAAATGCAGCACGACTTAAACATGGAAGTAGTTTCTCCAAAACTTCTAGAGGCTATCAGAATAATGGAAATGGCCAAAATAACTGGGAACACAGAAGGGCAGAATCTTCTATGTGGTTGACACTTATTAACAAGCTCTTGAAAAAGTCACTGTTGCCTGTGATCATATTCTGTTTTTCTAAGAATCGCTGTGATAAATCTGCTGATAATATGACTGGAACTGACCTAACTAGTAGCTCAGAGAAAAGTGAAATCCGTGTTTTCTGTGATAAAGCATTTTCAAGGCTGAAAGGATCTGACAGGAATTTACCGCAGGTTGTTCGTGTCCAGAATCTTCTTCGTAGAGGGATTGGTGTGCATCATGCTGGCCTTCTTCCAATTGTAAAGGAAGTAGTCGAAATGCTATTCTGTCGTGGTGTTATCAAGGTTTTGTTTTCAACGGAGACATTTGCCATGGGTGTCAATGCTCCTGCTAGAACAGTAGTCTTTGATACTTTAAGGAAATTTGATGGCAAGGAATTTAGGCAGTTAATACCAGGAGAATATACTCAAATGGCTGGTCGAGCTGGAAGAAGAGGTCTCGATAAGATTGGTACTGTTATTCTAATGTGTCGTGATGAAATCCCTGAAGATAAGGATTTAAAGCATGTTATTGTTGGAAATGCAACCCGCCTTGAATCTCAATTTCGGCTAACCTATATTATGATCCTCCATCTCCTTCGAGTTGAAGAATTGAAGGTAGAAGATATGCTTAAAAGAAGTTTTGCTGAATTCCATGCTCAGAAAAAACTACCTGAAATGCAAGAACTTTTGAAGCGAAAGCTTAATCAGCCTACAAAAGCTATTGAATGCATAAAGGGCGAGCCAACCATCGAGGAATACTATGAGACATACTCTGAAGCTGAGCAGTACAGTAGCAAAATATCAGATGCAATTTTGCAGTCCCCTATTGCCCAACAATTTCTTGCTCCTGGAAGAGTAGTAGTCGTAAAATCAGAATCAACCAAGGATCACCTGCTTGGTGTGATTGTGAAAGCTCCTTCCGCAAATTATAAGCAATATATTGTTTTAGTGCTCAGGCCTGATTTTCCATCCCCAGTGGAAAGTGCCACAAGTAGGGGTAATGTGCAAGATAAACCCAGTGACTTCAACCAGGGTTATTTTGTGGTGCCTAAATCAAAACGTGGGTTTGGAGATGATTATCATACCTCTGTTTCAGCTCGTAAGGGAACAGGTATTATCAACATCACACTGCCACATCGTGGTTATGTTAGTGGAATGAGTTATGAGGTTCGAGGAGTTGATAGTAAGGAATTTCAATGCATTTGCAATAGCAAAATAAAAATTGACCAAGTTGGGCTTCTTGAAGATGTTAGCAATGCTGTTTACTCCAAGACAGTTCAGATGCTCCTGGGCTTAAAAAAATCAGATGGAAACAAATACCCTCCACCCCTGGATCCTGTGAAAGATCTAAAGTTGAAGGATGTTGACCTTGTGAACACATACCGCAAATGGACAAAATTATTGGAGAAGATGACCCTGAATCCGTGTCATGGGTGTATAAAATTGGAAGAGCACATTAAGTTAGCGAAAGACGTACAAAAGCACAAACAAGAAGTCATTGATCTTCAATTTAAAATTTCAGACGAAGCACTTCAACAGATGCCAGAATTTCAGGGCCGGATTGATGTTCTGAAGGAAATTGGTTGCATAGATGATGATTTTGTTGTACAGATGAAAGGCCGTGTTGCCTGTGAGATGAACTCCGGTGAGGAATTGATTTGTACTGAAATCTTGTTTGAGAATCAGCTGGATGAACTGGAACCGGAAGAAGCTGTGGCATTAATGTCGGCTTTTGTGTTCCAGCAAAAGAACACTTCTGAACCTTCACTCACAACCAAGCTGTCTGAGGCAAAACATAAATTGTACAATACGGCGATAAAACTTGGAGAACTTCAAAGGCAGAAAGGACTACCTATAGATCCTGAAGAATATGCCCAAGAAAATCTCAAGTTTGGTCTAGTTGAAGTGGTTTATGAGTGGGCAAAGGGTACTCCATTTGCAGACATCTGTGAGCTCACGGATGTTCCTGAAGGCTTGATAGTGAGGACCATTGTGAGACTAGACGAGACGTGTCGAGAGTTTAAGAATGCTGCGGCGATTATGGGGAATTCTGCTCTCTGCAAGAAAATGGAAGTTGCTTCTAATGCAATTAAGCGTGACATTGTTTTTGCAGCTAGCTTGTACGTTACTGGTGTATGA 4035 0.4218 MDPIEAWQELGFRVGFTGHSGHLRVEPLSTVERSNPLSSLPDFILPPAFPEETPESIKKYIEETYLSPRLDPDEFSPEKVGRQWEFDWFDRAEVPLDPSFPRTVVVPVWEPPFRRQNNVSEQSKWEPKSEEVDVSELMLGDEDSGPLPRVSGSAKDFVRGSINSRPFRPGGLDKSQTLNRILPEGASNGEWVREILNGGPPQTIPPGFKQGLDLGEFKPYPCSWNVDKGASSLKSSSDEKLSELSLQFDDLFKKAWEDGVTHEQEEDGHLSKVESVMLEVEVDKAEASSSMHEDEFSLDEVLSTKSEGLKPLLDASSDGGRQQKEAWARHGGSKEIIDHFHELVPDMALQFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVTLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELYKICESETFLPQGLKAAKDVFKKKRSPAVGGGSGRYSGTSAGHDGTQVQKRENAARLKHGSSFSKTSRGYQNNGNGQNNWEHRRAESSMWLTLINKLLKKSLLPVIIFCFSKNRCDKSADNMTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLIPGEYTQMAGRAGRRGLDKIGTVILMCRDEIPEDKDLKHVIVGNATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEMQELLKRKLNQPTKAIECIKGEPTIEEYYETYSEAEQYSSKISDAILQSPIAQQFLAPGRVVVVKSESTKDHLLGVIVKAPSANYKQYIVLVLRPDFPSPVESATSRGNVQDKPSDFNQGYFVVPKSKRGFGDDYHTSVSARKGTGIINITLPHRGYVSGMSYEVRGVDSKEFQCICNSKIKIDQVGLLEDVSNAVYSKTVQMLLGLKKSDGNKYPPPLDPVKDLKLKDVDLVNTYRKWTKLLEKMTLNPCHGCIKLEEHIKLAKDVQKHKQEVIDLQFKISDEALQQMPEFQGRIDVLKEIGCIDDDFVVQMKGRVACEMNSGEELICTEILFENQLDELEPEEAVALMSAFVFQQKNTSEPSLTTKLSEAKHKLYNTAIKLGELQRQKGLPIDPEEYAQENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALCKKMEVASNAIKRDIVFAASLYVTGV 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1738 1344 Gene3D - 527 817 IPR027417 -
Lele28g1738 1344 SMART DSHCT_2 1163 1341 IPR012961 -
Lele28g1738 1344 SMART helicmild6 698 784 IPR001650 -
Lele28g1738 1344 Pfam Ski2 N-terminal region 79 219 IPR040801 -
Lele28g1738 1344 Gene3D - 318 526 IPR027417 -
Lele28g1738 1344 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 637 831 IPR001650 -
Lele28g1738 1344 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 252 1325 - -
Lele28g1738 1344 Pfam rRNA-processing arch domain 839 1140 IPR025696 -
Lele28g1738 1344 FunFam DExH-box ATP-dependent RNA helicase DExH11 527 817 - -
Lele28g1738 1344 Pfam DSHCT (NUC185) domain 1167 1336 IPR012961 -
Lele28g1738 1344 Gene3D - 1122 1341 - -
Lele28g1738 1344 Gene3D - 818 884 - -
Lele28g1738 1344 MobiDBLite consensus disorder prediction 566 619 - -
Lele28g1738 1344 PIRSF SKI2 48 1341 IPR016438 GO:0003723|GO:0003724|GO:0006401
Lele28g1738 1344 CDD SF2_C_Ski2 623 796 - -
Lele28g1738 1344 SMART ultradead3 351 531 IPR014001 -
Lele28g1738 1344 MobiDBLite consensus disorder prediction 599 619 - -
Lele28g1738 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 798 IPR027417 -
Lele28g1738 1344 Pfam DEAD/DEAH box helicase 358 505 IPR011545 GO:0003676|GO:0005524
Lele28g1738 1344 FunFam DExH-box ATP-dependent RNA helicase DExH11 818 885 - -
Lele28g1738 1344 FunFam ATP-dependent RNA helicase SKI2 318 526 - -
Lele28g1738 1344 FunFam Ski2 ATP-dependent RNA helicase 1116 1341 - -
Lele28g1738 1344 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 518 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1738 Lele-ChrLele28 20250619 20267963 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1738 28 20250619 20267963 Lele01g1317 01 8041954 8046214 CCT
Lele28g1738 28 20250619 20267963 Lele02g1590 02 19789841 19795113 CCT
Lele28g1738 28 20250619 20267963 Lele03g1331 03 8029483 8035585 CCT
Lele28g1738 28 20250619 20267963 Lele04g1580 04 20667047 20671315 CCT
Lele26g1730 26 20838792 20856134 Lele28g1738 28 20250619 20267963 hybridization