Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1730 ATGGATCCAATCGAAGCATGGCAAGAGCTTGGTTTTCGGGTCGGGTTCACCGGTCACAGTGGACACCTCCGAGTGGAGCCGCTGTCGACAGTGGAGCGTTCCAACCCATTGAGTTCGCTTCCTGATTTCATTCTGCCACCTGCATTTCCGGAGGAGACTCCTGAATCTATAAAGAAGTATATTGAAGAGACATATCTCAGCCCTAGATTGGATCCTGATGAATTTTCACCCGAGAAAGTTGGGAGGCAGTGGGAATTTGACTGGTTTGACAGGGCTGAAGTACCTCTGGATCCATCTTTGCCTCGGACTGTTGTGGTTCCTGTTTGGGAACCACCATTTCGACGCCAAAACAATGTTTCAGAGCAAGGAAAGTGGGAGCCGAAATCTGAGGAGGTATGTTATGTATTTTCTGCTTATGCTGTCATAATCATCTGCATTGCAATACCTGTAGGGATGGTTGTGGATGTGTCAGACTTGATGCTAGGAGATGAAGACTCTGGGCCATTACCACGTGTTTCTGGATCTGCTAAGGACTTTGTAAGGGGAAGCATCAATAGTCGACCTTTTCGTCCTGGAGGTTTGGATAAATCCCAAACTTTAAACAGAATTCTTCCAGAAGGTGCTTCTAATGGTGAATGGGTGCGTGAAATTTTGAATGGTGGCCCGCCTCAGACGATTCCTCCAGGCTTTAAACAAGGGTTGGACCTTGGAGAATTTAAGGGTGCCAGTTCTCTTAAGAGCTCATCAGATGAAAAACTGAGTGAGTTGTCTCTACAGTTTGATGACTTATTTAAGAAGGCTTGGGAAGATGGTGTTACTCATGAACAAGAGGAAGATGGCCATTTATCAAAAGTGGAGTCTGTTATGCTGGAAGTTGAAGTTGATAAGGCCGAGGGATCTAGCAGTATGCATGAGGATGAATTTTCTTTAGATGAGGTCTTGTCAACTAAATCAGAAGGATTAAAACCACTTTTAGATGCATCTAGTGATGGTGGACGGCAGCAAAAGGAGGCTTGGGCACGTAGTGGAGGTAGCAAAGAGATCATAGATCACTTCCATGAACTTGTTCCTGATATGGCACTTCAGTTTCCCTTTGAATTGGATGCATTTCAGAAGGAGGCTATATATTATCTTGAGAAAGGGGAATCTGTTTTTGTTGCTGCTCACACATCAGCTGGAAAGACAGTAGTGGCAGAATATGCATTTGCTTTAGCATCAAAGCATTGCACTAGGGCTGTGTATACCGCTCCAATAAAAACAATCAGCAATCAGAAATATAGGGATTTCTGTGGGAAGTTTGATGTTGGGCTGCTTACAGGTGATGTAACCTTGAGGCCTGAGGCTTCTTGTCTCATCATGACCACAGAAATTTTAAGGTCCATGCTCTATCGAGGTGCAGATATTATTCGGGATATTGAATGGGTTATATTTGACGAAGTGCATTATGTCAATGATGCTGAAAGAGGTGTTGTTTGGGAAGAAGTACCTAACACGGTTGAATTTGCTGATTGGATTGGTCGGACGAAACAAAAGGAAATTCGAGTTACAGGGACAACAAAAAGACCTGTCCCATTGGAGCACTGCCTGTTTTATTCTGGAGAACTTTACAAAATTTGTGAAAATGAAACATTTCTGCCTCAGGGACTGAAAGCTTCTAAGGATGTGTTTAAGAAAAAGAATTCACCTGCGGTTGGTGGTGGTTCTGGACGATATTCGGGGACATCAGCAGGTCATGATGGTACTCAAGTTCAAAAACGTGAAAATGCAGCACGACTTAAACATGGAGGCAGTTTCTCCAAAACTTCTAGAGGCTATCAGAATAATGGAAATGGCCAAAACAACTGGGATCTCAGGAGGGCAGAAGCTTCTATGTGGTTGACTCTTATTAACAAGCTCTCGAAAAAGTCACTGTTGCCTGTGATCATATTCTGTTTTTCTAAGAATCGCTGTGATAAATCTGCTGATAATATGACTGGAACTGACCTAACGAGTAGCTCAGAGAAAAGTGAAATCCGTGTTTTCTGTGATAAAGCATTTTCAAGGCTGAAAGGATCTGACAGGAATTTACCGCAGGTTGTTCGAGTCCAGAATCTTCTACGGAGAGGGATTGGTGTGCATCATGCTGGCCTTCTTCCAATTGTAAAGGAAGTAGTCGAAATGCTATTCTGTCGTGGTGTTATCAAGGTTTTGTTTTCAACGGAGACATTTGCCATGGGTGTCAATGCTCCTGCTAGAACAGTAGTCTTTGATACTTTAAGGAAATTTGATGGCAAGGAATTTAGGCAGTTACTACCAGGAGAATATACTCAAATGGCTGGTCGTGCTGGAAGAAGAGGTCTTGATAAGATTGGTACTGTTATTCTAATGTGCCGTGATGAAATCCCTGAAGATAAGGATTTAAAGCATGTTATTGTTGGAAATGCAACCCGCCTTGAATCTCAATTTCGGCTAACCTATATTATGATCCTCCATCTCCTTCGAGTTGAAGAATTGAAGGTAGAAGATATGCTTAAAAGAAGTTTTGCTGAATTCCATGCTCAGAAAAAACTACCTGAAATGCAAGAACTTTTGAAGCGAAAGCTTAATCAGCCTACAAAAGCTATTGAATGCATAAAGGGCGAGCCAACCATCGAGGAATACTATGAGACATACTCCGAAGCTGAGCAGTACAGTAGCACAATATCAGATGCAATTTTGCAGTCCTCTAATGCCCAACAATTTCTTACTCCTGGAAGAGTAGTAGTCGTAAAATCAGAATCAACCAAGGATCACCTGCTTGGTGTGATTGTGAAAGCTCCTTCCGCAAATTATAAGCAATATATTGTTTTAGTGCTCAGGCCTGATTTGCCATCCCCAGTGGAAAATGCCCCAAGTGGGGGTAATGTGCAAGATAAACCCAGTGACTTCAACCAGGGTTATTTTATGGTGCCTAAATCAAAACGTGGCTTTGGAGATGATTATCATACCTCTGTTTCAGCTCGTAAGGGAACAGGTATTATCAACATCACACTGCCACATCGTGGTTATGTTAGTGGAATGAGTTATGAGGTTCGAGGAGTTGATAGTAAAGAATTTCAATGCATTTGCAATAGCAAACAAAAAATTGACCAAGTTGGGCTTCTTGAAGATGTTAGCAATGCTGTTTACTCCAAGACAGTTCGGATGCTCCTGGACTTAAAAAAATCAGATGGAAACAAGTACCCTCCACCCCTGGATCCTGTGAAAGATCTAAAGTTGAAGGATGTTGACCTTGTGAACACATACCGCAAATGGACTAAATTATTGGAGAAGATGACCCTGAGTCCGTGTCATGGGTGTATAAAATTGGAAGAGCACATTAAGTTAGCGAAAGACCTACAAAAGCACAAACAAGAAGTCATTGATCTTCAATTTAAAATTTCAGACGAAGCACTTCAACAGATGCCAGAATTTCAGGGCCGGATTGATGTTTTGAAGGAAATTGGTTGCATAGATGATGATTTTGTTGTACAAATGAAAGGCCGTGTTGCCTGTGAGATGAACTCCGGTGAAGAATTGATTTGTACTGAAATCTTGTTTGAGAATCAGCTGGATGAACTGGAACCGGAAGAAGCTGTGGCATTAATGTCGGCTTTTGTGTTCCAGCAAAAGAACACTTCTGAACCTTCACTCACAACCAAGCTGTCTGAGGCAAAACATAAATTGTACAATACGGCGATAAAACTTGGAGAACTTCAAAGGCAGAAAGGACTACCGATAGATCCTGAAGAATATGCCCAAGAAAATCTCAAGTTTGGTCTAGTTGAAGTGGTTTATGAGTGGGCAAAGGGTACTCCATTTGCAGACATATGTGAGCTCACGGATGTTCCTGAAGGCTTGATAGTGAGGACCATTGTGAGACTAGACGAGACGTGTCGAGAGTTTAAGAATGCTGCGGCGATTATGGGGAATTCTGCTCTCTGCAAGAAAATGGAAGTTGCTTCTAATGCAATTAAGCGTGACATTGTTTTTGCAGCTAGCTTGTACGTTACTGGTGTATGA 4020 0.4226 MDPIEAWQELGFRVGFTGHSGHLRVEPLSTVERSNPLSSLPDFILPPAFPEETPESIKKYIEETYLSPRLDPDEFSPEKVGRQWEFDWFDRAEVPLDPSLPRTVVVPVWEPPFRRQNNVSEQGKWEPKSEEVCYVFSAYAVIIICIAIPVGMVVDVSDLMLGDEDSGPLPRVSGSAKDFVRGSINSRPFRPGGLDKSQTLNRILPEGASNGEWVREILNGGPPQTIPPGFKQGLDLGEFKGASSLKSSSDEKLSELSLQFDDLFKKAWEDGVTHEQEEDGHLSKVESVMLEVEVDKAEGSSSMHEDEFSLDEVLSTKSEGLKPLLDASSDGGRQQKEAWARSGGSKEIIDHFHELVPDMALQFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVTLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEVPNTVEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELYKICENETFLPQGLKASKDVFKKKNSPAVGGGSGRYSGTSAGHDGTQVQKRENAARLKHGGSFSKTSRGYQNNGNGQNNWDLRRAEASMWLTLINKLSKKSLLPVIIFCFSKNRCDKSADNMTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVILMCRDEIPEDKDLKHVIVGNATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEMQELLKRKLNQPTKAIECIKGEPTIEEYYETYSEAEQYSSTISDAILQSSNAQQFLTPGRVVVVKSESTKDHLLGVIVKAPSANYKQYIVLVLRPDLPSPVENAPSGGNVQDKPSDFNQGYFMVPKSKRGFGDDYHTSVSARKGTGIINITLPHRGYVSGMSYEVRGVDSKEFQCICNSKQKIDQVGLLEDVSNAVYSKTVRMLLDLKKSDGNKYPPPLDPVKDLKLKDVDLVNTYRKWTKLLEKMTLSPCHGCIKLEEHIKLAKDLQKHKQEVIDLQFKISDEALQQMPEFQGRIDVLKEIGCIDDDFVVQMKGRVACEMNSGEELICTEILFENQLDELEPEEAVALMSAFVFQQKNTSEPSLTTKLSEAKHKLYNTAIKLGELQRQKGLPIDPEEYAQENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALCKKMEVASNAIKRDIVFAASLYVTGV 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1730 1339 SMART ultradead3 363 526 IPR014001 -
Lele26g1730 1339 CDD SF2_C_Ski2 616 791 - -
Lele26g1730 1339 MobiDBLite consensus disorder prediction 599 613 - -
Lele26g1730 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 507 IPR027417 -
Lele26g1730 1339 FunFam ATP-dependent RNA helicase SKI2 330 495 - -
Lele26g1730 1339 FunFam DExH-box ATP-dependent RNA helicase DExH11 522 812 - -
Lele26g1730 1339 FunFam DExH-box ATP-dependent RNA helicase DExH11 813 880 - -
Lele26g1730 1339 Pfam DSHCT (NUC185) domain 1162 1331 IPR012961 -
Lele26g1730 1339 FunFam Ski2 ATP-dependent RNA helicase 1111 1336 - -
Lele26g1730 1339 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 375 553 IPR014001 -
Lele26g1730 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 793 IPR027417 -
Lele26g1730 1339 Gene3D - 813 899 - -
Lele26g1730 1339 Gene3D - 1117 1336 - -
Lele26g1730 1339 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 628 826 IPR001650 -
Lele26g1730 1339 SMART DSHCT_2 1158 1336 IPR012961 -
Lele26g1730 1339 SMART helicmild6 693 779 IPR001650 -
Lele26g1730 1339 MobiDBLite consensus disorder prediction 560 613 - -
Lele26g1730 1339 Gene3D - 522 812 IPR027417 -
Lele26g1730 1339 PIRSF SKI2 150 1336 IPR016438 GO:0003723|GO:0003724|GO:0006401
Lele26g1730 1339 PIRSF SKI2 50 134 IPR016438 GO:0003723|GO:0003724|GO:0006401
Lele26g1730 1339 Pfam DEAD/DEAH box helicase 370 507 IPR011545 GO:0003676|GO:0005524
Lele26g1730 1339 Gene3D - 330 521 IPR027417 -
Lele26g1730 1339 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 268 1320 - -
Lele26g1730 1339 Pfam rRNA-processing arch domain 834 1135 IPR025696 -
Lele26g1730 1339 Pfam Ski2 N-terminal region 162 238 IPR040801 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1730 Lele-ChrLele26 20838792 20856134 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1730 26 20838792 20856134 Lele01g1317 01 8041954 8046214 CCT
Lele26g1730 26 20838792 20856134 Lele02g1590 02 19789841 19795113 CCT
Lele26g1730 26 20838792 20856134 Lele03g1331 03 8029483 8035585 CCT
Lele26g1730 26 20838792 20856134 Lele04g1580 04 20667047 20671315 CCT
Lele26g1730 26 20838792 20856134 Lele28g1738 28 20250619 20267963 hybridization