Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1580 ATGGCTGAGGGAGAGATTTCTTATCCATTGTTTGAAACAAAGAGAGCCACAAGTGGGTGGCTCATCATACACAGGCTCTTCTCTATCTCATTATTCGTCGGAATATTCTCAATCTGGCTTTACAGATTCTCACATTTGTTCTTCAATATCCTCCATGGTGGTGAAGAAGAAGAAGATGATGATGAGAAATCTTGGGTCGTCGTCGTCGTCTGGGTTGGCTTGCTTGGTAGTGAACTATTTTTTGGACTGTACTGGGTTTTCACTCAAGCTCTCAGATTGAACCCTGTGTTCAGAAAAACCTTCAAGCACAGACTCTCTCAAAGATATGAGCATAGTTTACCAAGAGTGGACGTGTTCGTTTGCACGGCAGACCCAGAGAAAGAGCCACCAATGATGGTTATGAACACTGTGTTATCTGTAATGGCTTATGATTATCCCTCTGAGAAACTGAGTGTGTATCTCTCGGACGATGCTGCCTCAGAGATCACCTTCTACGCTTTACTCCAAGCTTCTTCTTTTGCTAAGCACTGGCTTCCCTTCTGCAAAAGATTCAACATCGAACCCAGATCTCCTTCCGCTTATTTTAAAACTTTGTCCTTCCCTACTTCTTCAAATGACTCTGCTGGGACCAAAGAGTTGGCAGATATTAAGAAACTATACGAAGATATGGAAAGACGAGTCGAAGAAGCAGCCAAGTCGGGACAAGTACCCAGAGAAGTGCGTTCAAAGAACGAGGGATTTTCTCAGTGGGATTCGTTTTCTTCTCGACGTGACCATGATACAATTCTCAAAATATTACTTCATAGAAAAGATGTACACAACTCAAAAGATGCAGATGGGTCTGTTATGCCAACTTTGGTGTACTTGGCTCGTGAGAAGAGACCCCAATATCCCCATCATTTTAAAGCCGGAGCCATGAATTCACTGATAAGGGTGTCTTCAAAGATAAGCAAGGGCAAAATGATTCTGACCGTGGACTGTGACATGTCGTCGAACAGTTCAGAATCAGTGAGAGATGCACTGTGCTTCTTCATGGATGAAGAGAAAGGCCATGAAATAGCTTTTGTACAGTTCCCACAGAGCTTCGTCGGTGTCACTAACAATGACTTGTATGGGAGTTCTATGCGAGTATTCTGCGAGTTGGAAGCGCATGGTGCGGATGGTTGTGGTGGCCCATTGTATATTGGAACAAACTGCTTTCACTTGAGAGATATTCTTTGCGGTGAGAGGAAGTTCAGTGATCATCAACACAATATTATTATTAATGACTGCAACAACCACCATGAAGATGATGACCTACTGATCATGGAACAAAGCTTGCTCCAATGGCAAGAGCAAGAATCAAAGCCTCTTGCTAGTTGCACCTATGAACAAAACACACTCTGGGGAACACAGAAGGGGTTACTTTATGGATGTGCAGTGGAGGATGTAATAACAGGGTTAAGTATACACAGCAAAGGGTGGAAATCAGTGGATTACAATCCAGAAAGGAAGGCTTTCTTAGGAGCGCCAGTAACAACATTGGAACAAGCTCTGGTTCAGCAGAAGAGATGGGCAGAGGGTGATCTTCAGATTCTGGTTTCAAACTACAGTCCTGCATGGCATGCTTATGGCAAACTCAGTGTAGCCCTCCAACTGGTATACTGTAACTATTGCTTTTGGGCACCCAAGTCCCTCCCAACTCTCTATTTCTGCATCGCCCCTTCGCTTTGTCTCCTTAAGGGCATTCCCCTGTTTCCAAAGATATCAAGCCCATGGTTCATACCTTTCGCATATGTAATAATTGCGGAAACCACTTACAGCTTGTTTGAGTTTTTGAGCTGTGGAGGCACAATCCAGGGTTGGTGGAACGAGCAAAGGATTTGGCTCTACAAGAGAACAAGCTCTTACTTCTTTGCTTTCATGGAGAGCATCCTGAAGTTTCTAGGGTTTCCTCTAGCTTCAGGCTTCGCAATCACAGCTAAAGTTTCAGAACAAGACGCTTCCCAACGCTACGAGAAGGAGATTATGGAGTTTGGAACTTCTTCTCCTATGTTCACTCTCTTAGCAACACTTGCTATGCTCAATCTGTTTTGCTTTCTTGGAGTATCAATTGAAGCTCTGATAAGTGAAGGTGGCTTTATTGGGGTTTTGGAGAAGATGATCTTGCAAGTTATATTTTGTGGTGTTCTTGTTCTCATCAATGTTCCAATATACGAAGGACTTTTCTTTAGGAAGGACAAGGGAAGATTGCCTACTTCTGTGGCCATTAAATCTACAATATTTGCTTTAAGTGCATGTGTTCCCTTCAAAGCTTTGCACTAA 2304 0.4327 MAEGEISYPLFETKRATSGWLIIHRLFSISLFVGIFSIWLYRFSHLFFNILHGGEEEEDDDEKSWVVVVVWVGLLGSELFFGLYWVFTQALRLNPVFRKTFKHRLSQRYEHSLPRVDVFVCTADPEKEPPMMVMNTVLSVMAYDYPSEKLSVYLSDDAASEITFYALLQASSFAKHWLPFCKRFNIEPRSPSAYFKTLSFPTSSNDSAGTKELADIKKLYEDMERRVEEAAKSGQVPREVRSKNEGFSQWDSFSSRRDHDTILKILLHRKDVHNSKDADGSVMPTLVYLAREKRPQYPHHFKAGAMNSLIRVSSKISKGKMILTVDCDMSSNSSESVRDALCFFMDEEKGHEIAFVQFPQSFVGVTNNDLYGSSMRVFCELEAHGADGCGGPLYIGTNCFHLRDILCGERKFSDHQHNIIINDCNNHHEDDDLLIMEQSLLQWQEQESKPLASCTYEQNTLWGTQKGLLYGCAVEDVITGLSIHSKGWKSVDYNPERKAFLGAPVTTLEQALVQQKRWAEGDLQILVSNYSPAWHAYGKLSVALQLVYCNYCFWAPKSLPTLYFCIAPSLCLLKGIPLFPKISSPWFIPFAYVIIAETTYSLFEFLSCGGTIQGWWNEQRIWLYKRTSSYFFAFMESILKFLGFPLASGFAITAKVSEQDASQRYEKEIMEFGTSSPMFTLLATLAMLNLFCFLGVSIEALISEGGFIGVLEKMILQVIFCGVLVLINVPIYEGLFFRKDKGRLPTSVAIKSTIFALSACVPFKALH 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1580 767 FunFam Cellulose synthase isolog 106 203 - -
Lele04g1580 767 Pfam Cellulose synthase 116 424 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lele04g1580 767 Pfam Cellulose synthase 444 757 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lele04g1580 767 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 20 754 - -
Lele04g1580 767 Coils Coil 213 233 - -
Lele04g1580 767 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 258 424 IPR029044 -
Lele04g1580 767 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 106 197 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1580 Lele-ChrLele04 20667047 20671315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1580 2 760 Glycosyltransferase AT1G55850 53.947 0.0 794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1730 26 20838792 20856134 Lele04g1580 04 20667047 20671315 CCT
Lele28g1738 28 20250619 20267963 Lele04g1580 04 20667047 20671315 CCT
Lele01g1317 01 8041954 8046214 Lele04g1580 04 20667047 20671315 hybridization
Lele02g1590 02 19789841 19795113 Lele04g1580 04 20667047 20671315 hybridization