Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1394 ATGGTGTGGGGTCTCTTCCCCGTCGACCCTCATTCCGGTGAAGATAAGTACTACATATTTAGAAGTGGAATCTACAAAGTTGGCCGAAAAGATTGTGACGTTATCATCACTAAAGATAAAGGGGTTTCACGGGTTCATGCAGAAATTGTCATTCAGGCAATGACTAATGAGCCCTCTCGCTCATCATCCAAAGTACTAATTAGAGATTGCTCTAAGTATGGAACATTTATTAGCATGAATGTGGGGCCCAGGAGAAAAGTTCATGAGCTTCCAAATAAAGAAGCAACACTAGAGGATTGTGACCTTGTTTCTTTTGGAACTGGTAGTGCAGCCTACAGGTTTTCCCATGTCCCACTAGTTTTCTTCGTCTGTTCATTGGATAAAGCGGATCAATCTCTAGAAAAGAGAGTTTCATCATTTGGTGGTCGCATTACCAGTGCAATAGGACAAGAGTGCACTCATGTGCTGGTGGATCAGAACACGCCTTTGAAAAATGATCTCGTTGATGCTGTTGTGGCCAGGAAACCTTTGCTGCTCAAAACTTGGGTTGAGCTTGTTGCAGAAAAGAACATCCGCACTGAAATTCCTAGTTTTAATTCCTATATTCCAACACTGTCGGTGGAAGGAGCATCTGTCAGAGTTGTTGACCCTAAAGCTCGTGAACACTGCTTAAAGGGATATACATTTTTGTTGGAATCAGTTCACTTGTATAAATTTGGGGCCAAGCTAAAATATTTATTGGAAGTAGCTGGTGCAAAAATTGCTTCTTTTGAAGAATTCTGTTCAGAAAGCCAAGGATTAGATTATAGGGAAGATAATCGCTTAGTTTGCATCATCCCACGAGGACTGGCAAGCAAGTCCGACTGCTTCAATAAACAAAGTCCCTTATCTAGAGTGAATGAGATGGACATAACATGTGCTGCTTTAAGTGGACATCTAGATCCGTCTATATTGATCTCACCCTGTGTACTAGTTTCATCATCATGCTCTACGGATGAGACAATAGTAGCAGATTCTGACACCGAAGTTGAAACAGTCTCGTCATCCCATGCAAGGGAGACATCGTGTACAAGAGATGATATAAAATGTGAAGAAGCTGAGATATCATTGGATGTTGCTCCTGCCCGATTTAGTAATATGAAATTTGAGAGAAGGGAGACGACATCCTTGGATGATGTTTCTGCCAGATTGGAGGAAAAAGGTGACAAAAAAGATGAAAATAGAGAATCAGCTTTGCATGACGCTTCTTCCAGATTGGATGCGCAATATGGTGGTGCTGGTATGAGAGTGATGAAGAAAGGCAAGGTTGATGATTATGAAAATAGAAATTCAGATATTATTTACAGCCATGATTTAATTGTCCGAGATATAGATTCATCTTTTGTCACAAATGCTGCATCAAACAACAGTAGTCTTCCAAATTTTAAACGCTTTAGAAAGTTACATACAGAGTCGGGGAATAGTTTCAGCAATCTTATTCCGTTCGCAAAATATCCGTACAAGGACTCTGAGTGTGAAAATGAGGAGATTAACAAGTCTGTGAAGGAAGAGAGAAAGAGAAAGAAAATGGAGGCAATTGCAGAAGACTTGTTTAATAATGAGAAGGGGAGAAAGCGAGGCACGGCTGGTTTTCTTCGAGACATTCTTATTTCGAGATAA 1659 0.4051 MVWGLFPVDPHSGEDKYYIFRSGIYKVGRKDCDVIITKDKGVSRVHAEIVIQAMTNEPSRSSSKVLIRDCSKYGTFISMNVGPRRKVHELPNKEATLEDCDLVSFGTGSAAYRFSHVPLVFFVCSLDKADQSLEKRVSSFGGRITSAIGQECTHVLVDQNTPLKNDLVDAVVARKPLLLKTWVELVAEKNIRTEIPSFNSYIPTLSVEGASVRVVDPKAREHCLKGYTFLLESVHLYKFGAKLKYLLEVAGAKIASFEEFCSESQGLDYREDNRLVCIIPRGLASKSDCFNKQSPLSRVNEMDITCAALSGHLDPSILISPCVLVSSSCSTDETIVADSDTEVETVSSSHARETSCTRDDIKCEEAEISLDVAPARFSNMKFERRETTSLDDVSARLEEKGDKKDENRESALHDASSRLDAQYGGAGMRVMKKGKVDDYENRNSDIIYSHDLIVRDIDSSFVTNAASNNSSLPNFKRFRKLHTESGNSFSNLIPFAKYPYKDSECENEEINKSVKEERKRKKMEAIAEDLFNNEKGRKRGTAGFLRDILISR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1394 552 MobiDBLite consensus disorder prediction 388 418 - -
Lele28g1394 552 SUPERFAMILY BRCT domain 119 189 IPR036420 -
Lele28g1394 552 Coils Coil 500 520 - -
Lele28g1394 552 Pfam FHA domain 25 106 IPR000253 GO:0005515
Lele28g1394 552 Gene3D - 2 117 - -
Lele28g1394 552 MobiDBLite consensus disorder prediction 388 415 - -
Lele28g1394 552 SUPERFAMILY SMAD/FHA domain 13 121 IPR008984 GO:0005515
Lele28g1394 552 CDD BRCT 119 184 - -
Lele28g1394 552 ProSiteProfiles Forkhead-associated (FHA) domain profile. 25 78 IPR000253 GO:0005515
Lele28g1394 552 FunFam Nibrin 5 115 - -
Lele28g1394 552 CDD FHA 2 116 IPR000253 GO:0005515
Lele28g1394 552 PANTHER NIBRIN-RELATED 392 537 IPR040227 GO:0006302|GO:0007095|GO:0030870
Lele28g1394 552 ProSiteProfiles BRCT domain profile. 133 183 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1394 Lele-ChrLele28 10070347 10077403 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1394 28 10070347 10077403 Lele01g1064 01 6211049 6213888 CCT
Lele28g1394 28 10070347 10077403 Lele02g1091 02 6893405 6896218 CCT
Lele28g1394 28 10070347 10077403 Lele03g1070 03 6204531 6207389 CCT
Lele28g1394 28 10070347 10077403 Lele04g1076 04 6762763 6765621 CCT
Lele28g1394 28 10070347 10077403 Lele28g1394 28 10070347 10077403 ECH
Lele26g1409 26 9885071 9891491 Lele28g1394 28 10070347 10077403 hybridization