Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1070 ATGTCTGGGTTGTATAATCAAATTTCCTCACCTGTAAGGGCCAATTCTCCAAGTATAAACGTGAGAAGCAATTTTGATGTTGAAAGTCAGTACTTAGCGGAACTGTTGGCAGAACATCAGAAGCTTGCACCCTTCATGGAAGTGCTTCCTCTATGCAGCCGACTCCTGAATCAAGAGATTTTAAGGGTTTCTGGGAAGAACGGACTGATGCTGAACCAAGGGTTTAGTGACTTAGACAGAATGCAGTTTGGAAGTCCAAGCCTTATGGCTTCACCAGATGTAACAACAAACTTCACTGGCTGGAACAGCCTATCACATGAGGGATTGAACGTGGATTGGCAAACAACACCAGTTGTTCCGAGTTCTTCCATTGTGAAGAGGATATTGCGCTTGGATATTCCTAAGGAGACCTATCCAAATTTCAATTTTGTTGGTCGTCTTCTTGGCCCCCGAGGTAATTCACTGAAGCGGGTGGAGGCTACCACTGGTTGTCGTGTATTTATCAGAGGGAAAGGCTCAATAAAAGACCCAGACAAGGAGGAGTTGCTGAGGGGAAGGCCAGGCTATGAGCACCTGAATGATCCTCTGCACATTTTGATTGAGGCTGAACTGCCTGCCAATATTGTTGATATTAGGCTGAGGCAAGCACAGGAAATCATAGAAGAGCTGCTTAAACCTGTGGATGAGTCACAAGACTTTTATAAGAGGCAACAGCTAAGAGAACTTGCAATGATTAATTCCAACTTCAGAGAAGAGAGCCCTCAACTGAGTGGTAGTGTCTCTCCCTTCACTTCCAATGAAATAAAAAGGGCCAAAACAGATCAATAG 828 0.4444 MSGLYNQISSPVRANSPSINVRSNFDVESQYLAELLAEHQKLAPFMEVLPLCSRLLNQEILRVSGKNGLMLNQGFSDLDRMQFGSPSLMASPDVTTNFTGWNSLSHEGLNVDWQTTPVVPSSSIVKRILRLDIPKETYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPDKEELLRGRPGYEHLNDPLHILIEAELPANIVDIRLRQAQEIIEELLKPVDESQDFYKRQQLRELAMINSNFREESPQLSGSVSPFTSNEIKRAKTDQ 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1070 275 Pfam Homodimerisation region of STAR domain protein 28 66 IPR032377 -
Lele03g1070 275 MobiDBLite consensus disorder prediction 251 275 - -
Lele03g1070 275 CDD SF1_like-KH 130 250 - -
Lele03g1070 275 Pfam KH domain 137 175 IPR004088 GO:0003723
Lele03g1070 275 Gene3D K Homology domain, type 1 22 256 IPR036612 GO:0003723
Lele03g1070 275 PANTHER RNA-BINDING PROTEIN RELATED 28 263 IPR045071 -
Lele03g1070 275 MobiDBLite consensus disorder prediction 251 268 - -
Lele03g1070 275 SMART kh_6 125 225 IPR004087 GO:0003676
Lele03g1070 275 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 131 250 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1070 Lele-ChrLele03 6204531 6207389 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1409 26 9885071 9891491 Lele03g1070 03 6204531 6207389 CCT
Lele28g1394 28 10070347 10077403 Lele03g1070 03 6204531 6207389 CCT
Lele03g1070 03 6204531 6207389 Lele03g1070 03 6204531 6207389 ECH
Lele01g1064 01 6211049 6213888 Lele03g1070 03 6204531 6207389 hybridization
Lele02g1091 02 6893405 6896218 Lele03g1070 03 6204531 6207389 hybridization