Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1076 ATGTCTGGGTTGTATAATCAAATTTCCTCACCGGCACCTGTAAGGGCCAATTCTCCAAGTATAAACGTGAGAAGTAATTTTGATGTTGAAAGTCAGTACTTAGCGGAGCTGTTGGCAGAACATCAGAAGCTTGCACCCTTCATGGAAGTCCTTCCTCTATGCAGCCGACTTCTGAATCAAGAGATTTTAAGGGTTTCTGGAAAGAACGGACTGATGATGAACCAAGGGTTTAGTGACTTCGACAGAATGCAGTTTGGAAGTCCAAGCCTCATGGCTTCACCAGATATAACAACAAACTTCACTGGCTGGAACAGCCTATCACATGAGAGGTTTGCTGGAGCACAGGGATTGAACGTGGATTGGCAAACAACACCAACTGTTCCGAGTTCTCCTATGGTGAAGAGGATATTGCGCTTGGATATTCCTAAGGAGACCTATCCAAATTTCAATTTTGTTGGTCGTCTTCTTGGCCCCCGAGGTAATTCGCTGAAGCGGGTCGAGGCTACCACAGGTTGTCGTGTATTTATCAGAGGGAAAGGCTCAATAAAAGACCCAGACAAGGAGGAGTTACTGAGGGGAAGGCCAGGCTATGAGCACCTGAATGATCCTCTGCATATTTTGATTGAGGCTGAACTGCCTGCCAATATTGTTGATATTAGGCTGAGGCAAGCACAGGAAATCATAGAAGAGCTGCTTAAACCTGTGGATGAGTCACAAGACTTTTATAAGAGGCAACAGCTAAGAGAACTTGCAATGATTAATTCCAACTTCAGAGAAGAGAGCCCTCAACTGAGTGGTAGTGTCTCTCCCTTCACTTCCAATGAAATAAAAAGGGCCAAAACTGATCAATAG 852 0.4472 MSGLYNQISSPAPVRANSPSINVRSNFDVESQYLAELLAEHQKLAPFMEVLPLCSRLLNQEILRVSGKNGLMMNQGFSDFDRMQFGSPSLMASPDITTNFTGWNSLSHERFAGAQGLNVDWQTTPTVPSSPMVKRILRLDIPKETYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPDKEELLRGRPGYEHLNDPLHILIEAELPANIVDIRLRQAQEIIEELLKPVDESQDFYKRQQLRELAMINSNFREESPQLSGSVSPFTSNEIKRAKTDQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1076 283 Gene3D K Homology domain, type 1 24 264 IPR036612 GO:0003723
Lele04g1076 283 Pfam KH domain 145 183 IPR004088 GO:0003723
Lele04g1076 283 MobiDBLite consensus disorder prediction 259 283 - -
Lele04g1076 283 CDD SF1_like-KH 138 258 - -
Lele04g1076 283 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 139 258 IPR036612 GO:0003723
Lele04g1076 283 SMART kh_6 133 233 IPR004087 GO:0003676
Lele04g1076 283 PANTHER RNA-BINDING PROTEIN RELATED 30 271 IPR045071 -
Lele04g1076 283 MobiDBLite consensus disorder prediction 259 276 - -
Lele04g1076 283 Pfam Homodimerisation region of STAR domain protein 30 68 IPR032377 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1076 Lele-ChrLele04 6762763 6765621 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1409 26 9885071 9891491 Lele04g1076 04 6762763 6765621 CCT
Lele28g1394 28 10070347 10077403 Lele04g1076 04 6762763 6765621 CCT
Lele04g1076 04 6762763 6765621 Lele04g1076 04 6762763 6765621 ECH
Lele01g1064 01 6211049 6213888 Lele04g1076 04 6762763 6765621 hybridization
Lele02g1091 02 6893405 6896218 Lele04g1076 04 6762763 6765621 hybridization