Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1409 ATGGTGTGGGGTCTCTTCCCCGTCGACCCTCTTTCCGGTGAAGATAAGTACTACATATTTAGAAGTGGAATCTACAAAGTTGGCCGAAAAGATTGTGATGTTATCATCACTAAAGATAAAGGGGTTTCACGGGTTCATGCAGAAATTGTCATTCAGGCAATGATTAATGAGCCCTCTCGCTTATCATCCAAAGTACTAATCAGAGATTGCTCTAAGTATGGAACATTTATTAGCAAGAATGTGGGGCCCAGGAGAAAAGTTCATGAGCTTCCAAATAAAGAAGCAACACTAGAGGATTGTGACCTTGTTTCTTTTGGAACTGGTAGTGCAACCTATAGGTTTTCCCATGTCCCACTAGTTTTCTTCGTCTGTTCATTGGATAAAGCGGATCAATCTCTAGAAAAGAGAGTTTCATCATTTGGTGGTCGCATTACCAGTACAATAGGACAAGAGTGCACTCATGTGCTGGTGGATCAGAACACACCTTTGAAAAATGATCTCGTTGATGCTGTTGTGGCCAGGAAACCTTTGCTGCTCAAAACTTGGGTTGAGCTTGTTGCAGAAAAGAACATCAGCACTGAAATTCCTAGTTTTAGTTCTTATATTCCAACACTGTCGGTTGAAGGAGCATCTGTCAGAGTTGTTGACCCTAAAGCTCGTGAACACTGCTTAAAGGGATATACATTTTTGTTGGAATCAGTTCACTTGTATAAATTTGGGGCCAAGTTAAAATATTTATTGGAAGTAGCTGGTGCAAAAATTGCTTCTTTTGAAGAATTCTGTTCAGATAGCCAAGGATTAGATTATGGGGAAGATAATCGCGTAGTTTGCATCATCCCAGGAGGACCGGCAAGCAAGTCCGACTGCTTCAATAAACAAAGTCCCTTATCTAGAGTGAATGAGATGGACATAACATGTGCTGCTTTATGTGGACAGCTAGATCCGTCTATATTGATCTCACCCTGTGTACTAGTTCCATCATCATGCTCTACGGATGAGACAATAGTAGCAGATTCTGATACCGAAGTTGAAACGGTCTCATCATCCCATGCAAGGGAGACATCGTGTACAAGAGATGATGAAAAAGCTGAGATATCATTGGATGTTGCTCCTGCCAGATTTAGTAATATGAAATTTGAGAGAAGGGAGACAACATCCTTGGATGATGTTTCTGCCAGATTGGCGGAAAAAGGTGACAAAAAAGATGAAAATAGAGAATCAGCTTTGCATGACGCTTCTTCCAGATTGGATACGCAATATGGTGGTGCTGGTATGAGAGTGATGAAGAAAGACGAGGTTGATGATTATGAAAGTAGAAATTCAGATATTATTTACAGCCATGATTTAATTGTCCGAGATATAGATTCATCTTTCAGCACAAATGCTGCATCAAACAGCAGTAGTCTTCCAAATTTTAAACGCTTTAGAAAGTTACATACACAGTCGGGGAATAGTTTCAGCAATCTTATTCCGTTCGCAAAATATCCTTACAAGGACTCTGAGTGTGAAAATGAGGAGATTAACAAGTCTGTGAAGGAAGAGAGAAAGAGAAAGAAAATGGAGGCAATTGCAGAAGACTTGTTTAATAATGAGAAGGGGAGAAAGCGAGGCACGGCTGGTTTTCTTCGAGACATTCTTATTTCAAGATAA 1650 0.4024 MVWGLFPVDPLSGEDKYYIFRSGIYKVGRKDCDVIITKDKGVSRVHAEIVIQAMINEPSRLSSKVLIRDCSKYGTFISKNVGPRRKVHELPNKEATLEDCDLVSFGTGSATYRFSHVPLVFFVCSLDKADQSLEKRVSSFGGRITSTIGQECTHVLVDQNTPLKNDLVDAVVARKPLLLKTWVELVAEKNISTEIPSFSSYIPTLSVEGASVRVVDPKAREHCLKGYTFLLESVHLYKFGAKLKYLLEVAGAKIASFEEFCSDSQGLDYGEDNRVVCIIPGGPASKSDCFNKQSPLSRVNEMDITCAALCGQLDPSILISPCVLVPSSCSTDETIVADSDTEVETVSSSHARETSCTRDDEKAEISLDVAPARFSNMKFERRETTSLDDVSARLAEKGDKKDENRESALHDASSRLDTQYGGAGMRVMKKDEVDDYESRNSDIIYSHDLIVRDIDSSFSTNAASNSSSLPNFKRFRKLHTQSGNSFSNLIPFAKYPYKDSECENEEINKSVKEERKRKKMEAIAEDLFNNEKGRKRGTAGFLRDILISR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1409 549 SUPERFAMILY SMAD/FHA domain 16 122 IPR008984 GO:0005515
Lele26g1409 549 Coils Coil 497 517 - -
Lele26g1409 549 ProSiteProfiles BRCT domain profile. 133 183 IPR001357 -
Lele26g1409 549 Gene3D - 4 117 - -
Lele26g1409 549 MobiDBLite consensus disorder prediction 394 412 - -
Lele26g1409 549 CDD BRCT 119 184 - -
Lele26g1409 549 PANTHER NIBRIN-RELATED 2 534 IPR040227 GO:0006302|GO:0007095|GO:0030870
Lele26g1409 549 FunFam Nibrin 5 115 - -
Lele26g1409 549 ProSiteProfiles Forkhead-associated (FHA) domain profile. 25 78 IPR000253 GO:0005515
Lele26g1409 549 CDD FHA 2 116 IPR000253 GO:0005515
Lele26g1409 549 SUPERFAMILY BRCT domain 119 184 IPR036420 -
Lele26g1409 549 Pfam FHA domain 25 106 IPR000253 GO:0005515
Lele26g1409 549 MobiDBLite consensus disorder prediction 394 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1409 Lele-ChrLele26 9885071 9891491 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1409 26 9885071 9891491 Lele01g1064 01 6211049 6213888 CCT
Lele26g1409 26 9885071 9891491 Lele02g1091 02 6893405 6896218 CCT
Lele26g1409 26 9885071 9891491 Lele03g1070 03 6204531 6207389 CCT
Lele26g1409 26 9885071 9891491 Lele04g1076 04 6762763 6765621 CCT
Lele26g1409 26 9885071 9891491 Lele26g1409 26 9885071 9891491 ECH
Lele26g1409 26 9885071 9891491 Lele28g1394 28 10070347 10077403 hybridization