Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g1064 ATGTCTGGGTTGTATAATCAAATCTCCTCACCTGTAAGTGCCAATTCTCCAAGTATAAACGTGAGAAGCAATTTTGATGTTGAAAGTCAGTACTTAGCGGAACTGTTGGCAGAACATCAGAAGCTTGCACCCTTCATGGAAGTGCTTCCTCTATGCAGCCGACTCCTGAATCAAGAGATTTTAAAGTTTTCTGGGAAGAATGGACTGATGCTGAACCAAGGGTTTAGTGGCTTAGACAGAATGCAGTTTGGAAGTCGAAGCCTTATGGCTTCGCCAGATGTAACAACAAACTTTACTGGCTGGAACAGCCTATCACATGAGAGGTTTGCTGGAGCACAGGGATTGAACGTGGATTGGCAAACAACACCAGTTGTTCCGAGTTCTTCCATTGTGAAGAGGATATTGCGCTTGGATATTCCTAAGGAGACCTATCCAAATGTAATACATTTCAATTTTGTTGGTCGTCTTCTTGGCCCCCGAGGTAATTCACTGAAGCGGGTGGAGGCTACCACTGGTTGTCGTGTATTTATCAGAGGGAAAGGCTCAATAAAAGACCCAGACAAGGAGGAGTTGCTGAGGGGAAGGACAGGCTATGAGCACCTGAATGATCCTCTGCACATTTTGATTGAGGCTGAACTGCCTGCCAATATTGTTGATATTAGGCTGAGGCAAGCACAGGAAATCATTGAAGAGCTGCTTAAACCTGTGGATGAGACACAAGACTTTTATAAGAGGCAACAGCTAAGAGAACTTGCAATGATTAATTCCAACTTCAGAGAAGAGAGCCCTCAACTGAGTGGTAGTGTCTCTCCCTTCACTTCCAATGAAATAAAAAGGGCCAAAACAGATCAATAG 855 0.4409 MSGLYNQISSPVSANSPSINVRSNFDVESQYLAELLAEHQKLAPFMEVLPLCSRLLNQEILKFSGKNGLMLNQGFSGLDRMQFGSRSLMASPDVTTNFTGWNSLSHERFAGAQGLNVDWQTTPVVPSSSIVKRILRLDIPKETYPNVIHFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPDKEELLRGRTGYEHLNDPLHILIEAELPANIVDIRLRQAQEIIEELLKPVDETQDFYKRQQLRELAMINSNFREESPQLSGSVSPFTSNEIKRAKTDQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g1064 284 MobiDBLite consensus disorder prediction 260 277 - -
Lele01g1064 284 ProSiteProfiles Type-1 KH domain profile. 141 208 - -
Lele01g1064 284 PANTHER RNA-BINDING PROTEIN RELATED 28 272 IPR045071 -
Lele01g1064 284 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 146 259 IPR036612 GO:0003723
Lele01g1064 284 SMART kh_6 131 234 IPR004087 GO:0003676
Lele01g1064 284 Pfam Homodimerisation region of STAR domain protein 28 65 IPR032377 -
Lele01g1064 284 Pfam KH domain 149 184 IPR004088 GO:0003723
Lele01g1064 284 Gene3D K Homology domain, type 1 22 265 IPR036612 GO:0003723
Lele01g1064 284 CDD SF1_like-KH 136 259 - -
Lele01g1064 284 MobiDBLite consensus disorder prediction 260 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g1064 Lele-ChrLele01 6211049 6213888 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1409 26 9885071 9891491 Lele01g1064 01 6211049 6213888 CCT
Lele28g1394 28 10070347 10077403 Lele01g1064 01 6211049 6213888 CCT
Lele01g1064 01 6211049 6213888 Lele01g1064 01 6211049 6213888 ECH
Lele01g1064 01 6211049 6213888 Lele03g1070 03 6204531 6207389 hybridization
Lele01g1064 01 6211049 6213888 Lele04g1076 04 6762763 6765621 hybridization