Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0676 ATGCAGAGATTGAAAGCTCTGCTATCGGAGTCTAGGTGCTCTTTCCGCAGCTTTCATCGGAGAGCCTTCTCTGCTCAACCAAACTATGTCGAGCATGATGACGCCCAAGACCAGATTTTAGTTGAAGGAAAAGCTATATCGAGAGCTGCTATTCTTAACAGACCAAATTCTCTTAATGCACTTACTACTTCGATGGTATCCCGACTGACGAGACTGTATACTTCATGGGAAGATAATCCTGCTATCGGCTTTGTTTTAATGAAGGCTAATGGCAGGGCTTTTTGTGCTGGTGGAGACGTTGTAAGGCTTTATCACTTATTAAATCAAGGCAATGCTGAAGAAGCTAAACAGTTTTTCAATACATTATATAAGTACGTATATCTTCAAGGAACCTATCTTAAGCCCCATGTTGCTATTTTGGATGGTATAACAATGGGATGTGGTGCTGGAATTTCGCTTCCAGGGATGTTTCGTGTGGTAACCGATAAAACTCATTTTTCTAACCCAGAGGCTCAAATAGGTTTCCACCCTGATGCAGGAGCTTCCTTTTATCTCTCTCGTTTGCCTGGGTACTTGGGGGAATACCTTGCCCTTACAGGAGAGAAGCTTAATGGTGTGGAGATGATTGCCTGTGGCCTTGCTACTCACTACACACTAAATGCTAGGCTTGCTTTGCTTGAAGAACGCCTTGGTAAGCTGGTCTCAGATGATGCTTCTATTGTAGAGTCATCCCTGGCACAGTATGGTGATCTTGTTTATACAGACAGTGGGAGCATTCTTCGCAAGATTGATACAATTGATAGATGTTTTGGCCATGATACGGTTGAGGAAATTATTGACGCCCTGGAGAAGGAAGCCGCCGAGTCTGGTGATGAATGGTGTAAGACAACCCTTGAAAAGATAAGAGGGGCCTCTCCATTGAGTTTGAAAATTACTTTAAGATCTATACGTGAAGGGAGATTTGAAACTCTTGATAAGTGTCTTGTGCGTGAATATCGGATATCACTTCGTGGAATTTCTCAGCAGGTCTCATCGGACTTCCTGGAGGGTGCTCGAGCAAGACTGGTTGATAAAGATTTTGCCCCTAAGTGGGACCCACCTAGCTTAAAAGAAGTATCAGAGGACATGGTTGAATGCTATTTCTCCCCATTAAATGAAGTTGAGTCTGAATTGGAATTGCCCACCAACTTGCGCGAACCTTACATGTGA 1209 0.4351 MQRLKALLSESRCSFRSFHRRAFSAQPNYVEHDDAQDQILVEGKAISRAAILNRPNSLNALTTSMVSRLTRLYTSWEDNPAIGFVLMKANGRAFCAGGDVVRLYHLLNQGNAEEAKQFFNTLYKYVYLQGTYLKPHVAILDGITMGCGAGISLPGMFRVVTDKTHFSNPEAQIGFHPDAGASFYLSRLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNARLALLEERLGKLVSDDASIVESSLAQYGDLVYTDSGSILRKIDTIDRCFGHDTVEEIIDALEKEAAESGDEWCKTTLEKIRGASPLSLKITLRSIREGRFETLDKCLVREYRISLRGISQQVSSDFLEGARARLVDKDFAPKWDPPSLKEVSEDMVECYFSPLNEVESELELPTNLREPYM 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0676 402 CDD crotonase-like 52 216 - -
Lele28g0676 402 FunFam Probable 3-hydroxyisobutyryl-CoA hydrolase 2 33 397 - -
Lele28g0676 402 Gene3D - 33 398 - -
Lele28g0676 402 Pfam Enoyl-CoA hydratase/isomerase 49 381 IPR045004 -
Lele28g0676 402 Coils Coil 272 292 - -
Lele28g0676 402 SUPERFAMILY ClpP/crotonase 51 367 IPR029045 -
Lele28g0676 402 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 34 396 IPR032259 GO:0003860
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0676 Lele-ChrLele28 4335055 4339336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0676 1 402 Acyl Lipid Metabolism Gene Families AT4G31810 69.438 0.0 587
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0676 28 4335055 4339336 Lele01g0682 01 4014294 4015518 CCT
Lele28g0676 28 4335055 4339336 Lele02g0670 02 4027880 4029129 CCT
Lele28g0676 28 4335055 4339336 Lele03g0677 03 4017064 4018286 CCT
Lele28g0676 28 4335055 4339336 Lele04g0684 04 4165358 4166613 CCT
Lele25g0687 25 4340345 4345017 Lele28g0676 28 4335055 4339336 hybridization
Lele26g0691 26 4422898 4427179 Lele28g0676 28 4335055 4339336 hybridization