Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0860 ATGGGTGACTTCAAGCCCTTCTCAGACTCGGGTTCGGCCACAGTTTCACTGTCAATTAACGAGACTGTTAATGGGTCGCACCAATTTATGATAAAGGGGTATTCTTTGGTCAAAGGGATGGGTGCTGGGAGGTATATAATGAGCGACACATTTAGTGTTGGTGGCTACGATTGGGCAATTTATTTCTACCCTGATGGGAAGAACCCAGAGGATAATGCCATGTACGTTTCGGTTTTTATAGCCTTGGCGAGTGAGGGAACTGACATTAGGGCTTTGTTCAAGTTGACTTTGATCGACCGGAGTGGGAAAGGCAACGACAAAGTGTATAGTCATTTTGATCGCCCGTTGGAGAGTGGACCTTATACATTGAAATATAGAGGCAGCATGTGGGGTTACAAGCGTTTTTTCAGAAGAACATCATTGGAAAATTCAGAGTATCTGAAAGATGATTGCCTTGTCATGCATTGCACTGTTGGTGTTGTGAGAACTCGTTTAGAGGGAACTAAGCAGAGTGTTGCTATACTAAAACCTGACATGGGTGAGGATTTTAAGGGTTTGTTAGAATCTGAAGTTGGTTGTGACATAGTTTTTAAAGTTGGGAATGAAAGCTTCAAAGCTCATAAGTTGATACTTGCTGCCCGATCTCCCGTCTTTAGAGCTCAGTTTTTTGGACTTGTTGGGGATCCCAGCAGGGAGGAAGTGGTGTTAGACGATATTGAACCTTTTGTCTTCAAGGCAATGCTTCTCTTCATCTATACAGATAAACTTCCTGACATCCATGAGGTTATGGGCTCAATACACGTGTACTCACGAACTGCCATGGTGCAACACCTATTGGCCGCTGCTGATATGTATAATCTTGATAGTCTTAAAACGTTATGCGAATCAATTTTATGTGAAGAAATCAATACTAACACTGTAGCAACATCACTTGCACTGGCTGAGCAACATCACTGCCCGCAACTTAAGGCCTCTTGTTTAAAGTTTGTTGCAAATCCAGCAAATTTAGGAGTGGTAATGCAATCCGAAGCCTTCATGCACTTGAAGGAGAGCTGCCCTTCAATGTTGTCGGAGTTGCTGGAGGCATTTGCATTGGTGGAAGATACATTGAGCAGGAAGAGGAGTAGCAGTAGCATATATGGGCAAGATGGAACAGATGGTATGGCCGATGCATCGGCTAATCCAAGCGGCAGGCATGTCAGGAGGCGGATGTAG 1215 0.4403 MGDFKPFSDSGSATVSLSINETVNGSHQFMIKGYSLVKGMGAGRYIMSDTFSVGGYDWAIYFYPDGKNPEDNAMYVSVFIALASEGTDIRALFKLTLIDRSGKGNDKVYSHFDRPLESGPYTLKYRGSMWGYKRFFRRTSLENSEYLKDDCLVMHCTVGVVRTRLEGTKQSVAILKPDMGEDFKGLLESEVGCDIVFKVGNESFKAHKLILAARSPVFRAQFFGLVGDPSREEVVLDDIEPFVFKAMLLFIYTDKLPDIHEVMGSIHVYSRTAMVQHLLAAADMYNLDSLKTLCESILCEEINTNTVATSLALAEQHHCPQLKASCLKFVANPANLGVVMQSEAFMHLKESCPSMLSELLEAFALVEDTLSRKRSSSSIYGQDGTDGMADASANPSGRHVRRRM 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0860 404 ProSiteProfiles BTB domain profile. 193 256 IPR000210 GO:0005515
Lele27g0860 404 FunFam BTB-POZ and math domain 1 169 296 - -
Lele27g0860 404 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 17 360 IPR045005 GO:0016567
Lele27g0860 404 SUPERFAMILY POZ domain 177 300 IPR011333 -
Lele27g0860 404 SMART BTB_4 193 302 IPR000210 GO:0005515
Lele27g0860 404 Pfam BTB/POZ domain 183 300 IPR000210 GO:0005515
Lele27g0860 404 SMART math_3 29 141 IPR002083 GO:0005515
Lele27g0860 404 SUPERFAMILY TRAF domain-like 21 160 - -
Lele27g0860 404 CDD BACK_AtBPM-like 299 362 IPR034090 -
Lele27g0860 404 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 23 162 IPR008974 GO:0005515
Lele27g0860 404 Gene3D Potassium Channel Kv1.1; Chain A 171 302 IPR011333 -
Lele27g0860 404 CDD BTB_POZ_BPM_plant 179 299 - -
Lele27g0860 404 CDD MATH 25 158 IPR002083 GO:0005515
Lele27g0860 404 Gene3D - 303 378 - -
Lele27g0860 404 ProSiteProfiles MATH/TRAF domain profile. 24 158 IPR002083 GO:0005515
Lele27g0860 404 MobiDBLite consensus disorder prediction 376 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0860 Lele-ChrLele27 16622540 16626824 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0860 27 16622540 16626824 Lele25g1217 25 8071315 8076502 CCT
Lele27g0860 27 16622540 16626824 Lele26g1232 26 8049652 8054923 CCT
Lele27g0860 27 16622540 16626824 Lele27g0861 27 16637284 16642340 CCT
Lele27g0860 27 16622540 16626824 Lele28g1226 28 8063446 8067489 CCT
Lele27g0860 27 16622540 16626824 Lele28g1228 28 8077536 8081519 ECH
Lele27g0860 27 16622540 16626824 Lele27g0860 27 16622540 16626824 ECH
Lele25g1220 25 8100392 8101765 Lele27g0860 27 16622540 16626824 hybridization
Lele26g1233 26 8064244 8068223 Lele27g0860 27 16622540 16626824 hybridization