Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1220 ATGGGTGACTTCAAGCCCTTCTCAGCCTCGGGTTCGGCCTCGGTTTCACTGTCAATTAACGAGACTGTTAATGGGTCGCACCAATTTATGATGAAGGGGTATTCTTTGGTCAAAGGGATGGGTGCTGGGAGGTATATAATGAGCGACACATTTACTGTTGGTGGCTACTATTGGGCAATTTATTTCTACCTTGATGGGAAGAACCCAGAGGATAATGCAATGTACGTTTCATTTTTTATAGCCTTGGCGAGCGAGGGAACTGACGTTAGGGCTTTGTTCAAGTTGACTTTGATCGACCAGAGTGGGAAAGGCAACGACAAAGTGCATAGTCATTTTGATCGCCCGTTGGAGAGTGGACCTTATACATTGAAATATAAAGGCAGCATGGGTTACAAGCGTTTTTTCAGAAGAACATCATTGGAAAATTCAGATTATCTGAAAGATGATTGCCTTGTCATGCATTGCACTGTTGGTGTTGTGAGGACTCGTTTAGAGGGAACTAAGCAGAGTGTTACTATACTAAAACCTGACATGGGTGAGGATTTTAAGGGTTTGTTAGAATCTGAAGTTGGTTGTGACATAGTTTTTAAAGTTGGGAATGAAAGCTTCAAAGCTCATAAGTTGATACTTGCTGCCTGA 639 0.4241 MGDFKPFSASGSASVSLSINETVNGSHQFMMKGYSLVKGMGAGRYIMSDTFTVGGYYWAIYFYLDGKNPEDNAMYVSFFIALASEGTDVRALFKLTLIDQSGKGNDKVHSHFDRPLESGPYTLKYKGSMGYKRFFRRTSLENSDYLKDDCLVMHCTVGVVRTRLEGTKQSVTILKPDMGEDFKGLLESEVGCDIVFKVGNESFKAHKLILAA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1220 212 Gene3D Potassium Channel Kv1.1; Chain A 161 212 IPR011333 -
Lele25g1220 212 ProSiteProfiles BTB domain profile. 192 212 IPR000210 GO:0005515
Lele25g1220 212 SMART math_3 29 140 IPR002083 GO:0005515
Lele25g1220 212 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 23 160 IPR008974 GO:0005515
Lele25g1220 212 CDD MATH 25 157 IPR002083 GO:0005515
Lele25g1220 212 Pfam BTB/POZ domain 182 212 IPR000210 GO:0005515
Lele25g1220 212 ProSiteProfiles MATH/TRAF domain profile. 24 157 IPR002083 GO:0005515
Lele25g1220 212 SUPERFAMILY POZ domain 175 212 IPR011333 -
Lele25g1220 212 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 16 212 IPR045005 GO:0016567
Lele25g1220 212 SUPERFAMILY TRAF domain-like 21 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1220 Lele-ChrLele25 8100392 8101765 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1220 25 8100392 8101765 Lele26g1233 26 8064244 8068223 ECH
Lele25g1220 25 8100392 8101765 Lele25g1220 25 8100392 8101765 ECH
Lele25g1220 25 8100392 8101765 Lele27g0860 27 16622540 16626824 hybridization
Lele25g1220 25 8100392 8101765 Lele28g1228 28 8077536 8081519 hybridization