Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1232 ATGAACGGCGCCGGAGATGAACCAGGAGCTGACGCGGCGGCATTGCAAGGACTCAAGGTCTACATGTGGGGTTACCTCCCTGGAGCTCTGCCGCAGAGGTCGCCGCTCTTGACTCCGGTGCCTGTTAGGGTTCCGGCTTCGATTGGTTCTGCTGGTTACTCCTGGAAGGATGTTTGCGGTGGTGGTTGTGGATTTGCCATGGCTATATCTGAGTCAGGAAAGCTCATCACTTGGGGATCAACTGATGATCTAGGTCAAAGCTATGTGACATCTGGCAAGCACGGGGAAATTCCTGAGCCTTTCCCTATTCCAACTGAAGCTTCTATCGTAAAGGCTGCAGCTGGATGGGCACATTGTGCTGCTGTTACTGATGGTGGTGAAGTTTACACATGGGGATGGAAGGAATGTATTCCGTCTGGGAAGGTATTTGGTGAATCATCAACTGGGGCAAGTCGTGAAAAGGATTTATCGGACAGGCAGAGTTCATTATTGACAGAGCAAGTGAGCCCTCGCTCTCAAGGCTCAAGATCAACTGGAGGAACTGCTTCCAGTGCTAGTGGTGATGAAGGTACAAAGCGAAGGAGAGTTTCTTCGGCAAAGCAAACAGCTGAAAGCTCAACATCTGGTGATGATACTCTGAAAGCTTTTCCATGTCTTGTTGCACTAAATCCGGGTATAAGAATAACAACTGTTGCTACTGGTGGACGTCATACCTTAGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGGGAAGGGCAACTTGGCTTAGGCTCCAGAATACGAATGGTGTCCTCTCCTCATCTTATTCCTTGCATTAATTCTTCTGCATATGGAAAAGATAGATTTGCTGCACTTGCTCAAGGAAGCATGAATCCTGGGGGACAGAATTTTAGAGTTCCTGGGAGTTATGTGAAGGGAATTGCTTGTGGAGGTCGGCACAGTGCTGTTATCACAGATGCTGGAGCTTTGCTTACTTTTGGTTGGGGACTATATGGACAGTGTGGGCAAGGAAGTACAGATGATGAGCTAAGCCCAGCATGCGTATCTTCCTTGTTGGGTATCCGAATAGAGGGAGTAGCTGCGGGACTGTGGCATTCGGTCTGTGTATCTGCTGATGGTGATGTATATGCCTTTGGAGGAAATCAGTTTGGTCAGTTGGGAACTGGCGATGATCAAGCTGAGACTATACCAAGGCTACTGGATTCTCCAAGCTTGGAAAATGAGCATGCAAAGATTGTATCCTCTGGGGCTCGCCATACCGCGGTGGTAACAGAGAATGGAAAAGTATTTTGTTGGGGATGGAACAAGTACGGACAGCTTGGCCTTGGAGATGTTATTGACCGTAACATTCCTTCTCAAGTCACCGTTGAAGGATGTGTACCTAAAAACGTTGCATGTGGCTGGTGGCATACTCTTCTTCTGGCTGAGTCACCCACTTGA 1452 0.4862 MNGAGDEPGADAAALQGLKVYMWGYLPGALPQRSPLLTPVPVRVPASIGSAGYSWKDVCGGGCGFAMAISESGKLITWGSTDDLGQSYVTSGKHGEIPEPFPIPTEASIVKAAAGWAHCAAVTDGGEVYTWGWKECIPSGKVFGESSTGASREKDLSDRQSSLLTEQVSPRSQGSRSTGGTASSASGDEGTKRRRVSSAKQTAESSTSGDDTLKAFPCLVALNPGIRITTVATGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLIPCINSSAYGKDRFAALAQGSMNPGGQNFRVPGSYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPACVSSLLGIRIEGVAAGLWHSVCVSADGDVYAFGGNQFGQLGTGDDQAETIPRLLDSPSLENEHAKIVSSGARHTAVVTENGKVFCWGWNKYGQLGLGDVIDRNIPSQVTVEGCVPKNVACGWWHTLLLAESPT 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1232 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 377 430 IPR000408 -
Lele26g1232 483 MobiDBLite consensus disorder prediction 161 187 - -
Lele26g1232 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 311 321 IPR000408 -
Lele26g1232 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 231 241 IPR000408 -
Lele26g1232 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 73 125 IPR000408 -
Lele26g1232 483 Gene3D - 12 150 IPR009091 -
Lele26g1232 483 PRINTS Chromosome condensation regulator RCC1 signature 366 384 IPR000408 -
Lele26g1232 483 PRINTS Chromosome condensation regulator RCC1 signature 426 447 IPR000408 -
Lele26g1232 483 PRINTS Chromosome condensation regulator RCC1 signature 231 247 IPR000408 -
Lele26g1232 483 PRINTS Chromosome condensation regulator RCC1 signature 109 122 IPR000408 -
Lele26g1232 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 325 376 IPR000408 -
Lele26g1232 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 431 481 IPR000408 -
Lele26g1232 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 363 373 IPR000408 -
Lele26g1232 483 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 88 479 - -
Lele26g1232 483 MobiDBLite consensus disorder prediction 144 210 - -
Lele26g1232 483 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 417 427 IPR000408 -
Lele26g1232 483 Pfam Regulator of chromosome condensation (RCC1) repeat 109 133 - -
Lele26g1232 483 Pfam Regulator of chromosome condensation (RCC1) repeat 245 321 IPR000408 -
Lele26g1232 483 Pfam Regulator of chromosome condensation (RCC1) repeat 376 427 IPR000408 -
Lele26g1232 483 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Lele26g1232 483 Pfam Regulator of chromosome condensation (RCC1) repeat 325 373 IPR000408 -
Lele26g1232 483 Gene3D - 197 293 IPR009091 -
Lele26g1232 483 Gene3D - 297 483 IPR009091 -
Lele26g1232 483 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 324 IPR000408 -
Lele26g1232 483 SUPERFAMILY RCC1/BLIP-II 16 481 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1232 Lele-ChrLele26 8049652 8054923 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1233 26 8064244 8068223 Lele26g1232 26 8049652 8054923 CCT
Lele27g0860 27 16622540 16626824 Lele26g1232 26 8049652 8054923 CCT
Lele28g1228 28 8077536 8081519 Lele26g1232 26 8049652 8054923 CCT
Lele25g1217 25 8071315 8076502 Lele26g1232 26 8049652 8054923 CCT
Lele25g1217 25 8071315 8076502 Lele26g1232 26 8049652 8054923 ECH
Lele26g1232 26 8049652 8054923 Lele26g1232 26 8049652 8054923 ECH
Lele26g1232 26 8049652 8054923 Lele27g0861 27 16637284 16642340 hybridization
Lele26g1232 26 8049652 8054923 Lele28g1226 28 8063446 8067489 hybridization