Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1226 ATGAATGGCGCCGGAGATGAACCAGTAGCTGACGCGGCGGCATTGCAAGGACTCAATGTCTACATGTGGGGTTACCTCCCTGGAGCTCTGCCTCAGAGGTCGCCGCTCTTGACTCCGGTGCCTGTTAGGGTTCCGCCTTCGATTGGTTCCGCTGGTTACTCCTGGAAGGATGTTTGCGGTGGTGGTTGTGGATTTGCCATGGCTATCTCTGAGTCAGGAAAGCTTATCACTTGGGGATCAACTGATGATCTAGGTCAAAGCTATGTGACATCTGGCAAGCACGGGGAAATTCCTGAGCCTTTCCCTATTCCAACTGAAGCTTCTATCGTAAAGGCTGCAGCTGGATGGGCACATTGTGCTGCTGTTACTGATGGTGGTGAAGTTTACACATGGGGATGGAAGGAATGTATTCCGTCTGGGAAGGTATTTGGTGAATCATCAACTGGGGCAAGTCGTGAAAAGGATTTATCGGAAAGGCAGAGTTCATTATTGACAGAGCAAGTGAGCCCTCGCTCTCAAGGCTCAAGATCAACTGGAGGAACTGCTTCCAATGCTAGTGGAGATGAAGGTACAAAGCGAAGGAGAGTTTCTTCAGCAAAGCAAACAGCTGGAAACTCAACATCTGGTGATGATACTCTGAAAGCTTTTCCATGTCTTGTTGCACTAAATCCAGGTATAAGAATAACAACTGTTGCTGCTGGTGGACGTCATACCTTAGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGAGAAGGGCAGCTTGGCTTAGGCTCCAGAATACGAATGGTGTCCTCTCCTCATCTTATTCCTTGCATTAATTCTTCTGCATATGGAAAAGATAGATTTGCTGCACTTGCTCAAGGAAGCATGAATCCTGGGGGACAGAATTTTAGAGTTCCTGGGAGTTATGTGAAGGGAATTGCTTGTGGAGGTCGGCACAGTGCTGTTATCACAGACGCTGGAGCTTTGCTTACTTTTGGTTGGGGACTATATGGACAGGTAAAGTAG 1020 0.4824 MNGAGDEPVADAAALQGLNVYMWGYLPGALPQRSPLLTPVPVRVPPSIGSAGYSWKDVCGGGCGFAMAISESGKLITWGSTDDLGQSYVTSGKHGEIPEPFPIPTEASIVKAAAGWAHCAAVTDGGEVYTWGWKECIPSGKVFGESSTGASREKDLSERQSSLLTEQVSPRSQGSRSTGGTASNASGDEGTKRRRVSSAKQTAGNSTSGDDTLKAFPCLVALNPGIRITTVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLIPCINSSAYGKDRFAALAQGSMNPGGQNFRVPGSYVKGIACGGRHSAVITDAGALLTFGWGLYGQVK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1226 339 MobiDBLite consensus disorder prediction 144 209 - -
Lele28g1226 339 PRINTS Chromosome condensation regulator RCC1 signature 231 247 IPR000408 -
Lele28g1226 339 PRINTS Chromosome condensation regulator RCC1 signature 109 122 IPR000408 -
Lele28g1226 339 PRINTS Chromosome condensation regulator RCC1 signature 247 261 IPR000408 -
Lele28g1226 339 MobiDBLite consensus disorder prediction 161 187 - -
Lele28g1226 339 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 311 321 IPR000408 -
Lele28g1226 339 Pfam Regulator of chromosome condensation (RCC1) repeat 109 133 - -
Lele28g1226 339 Pfam Regulator of chromosome condensation (RCC1) repeat 228 257 - -
Lele28g1226 339 Pfam Regulator of chromosome condensation (RCC1) repeat 308 337 - -
Lele28g1226 339 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 231 241 IPR000408 -
Lele28g1226 339 Gene3D - 11 339 IPR009091 -
Lele28g1226 339 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 73 125 IPR000408 -
Lele28g1226 339 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 35 337 - -
Lele28g1226 339 SUPERFAMILY RCC1/BLIP-II 18 337 IPR009091 -
Lele28g1226 339 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 324 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1226 Lele-ChrLele28 8063446 8067489 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1233 26 8064244 8068223 Lele28g1226 28 8063446 8067489 CCT
Lele27g0860 27 16622540 16626824 Lele28g1226 28 8063446 8067489 CCT
Lele28g1228 28 8077536 8081519 Lele28g1226 28 8063446 8067489 CCT
Lele25g1217 25 8071315 8076502 Lele28g1226 28 8063446 8067489 CCT
Lele27g0861 27 16637284 16642340 Lele28g1226 28 8063446 8067489 ECH
Lele28g1226 28 8063446 8067489 Lele28g1226 28 8063446 8067489 ECH
Lele25g1217 25 8071315 8076502 Lele28g1226 28 8063446 8067489 hybridization
Lele26g1232 26 8049652 8054923 Lele28g1226 28 8063446 8067489 hybridization