Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1322 ATGGGAGGTCGCGGCAAGTCTCGCACTCAGCGAAAGCATTTCCGGCAGAGCAGAGAAAATGTGTGGAAGCGTTCAAAACCCGATCCTTCTCCTCAAGATCCTGATTCCACCGGCAATCCAAATCCTACTTGGTCTCCCTTCGCCTCTCAGAACTCTGCTTTTGATGAGTATTACCATGAGCAGGGCATAGTGCCACCAGAAGATTGGGATGCTTTCGTCGCAGTTCTCAGAACTCCATTGCCTGCTAGCTTCAGAATTAACGCTTGTAGCCAGTTTTCTGCTGATCTTAGGTCGCAATTGGAGAATGATTTTGTGCAAACTCTTCAGGCCGAGTTTGTTGAAGGGGATAAGACAGAGGCCATTAAACCTTTGCCATGGTATCCTGAGAATCTTGCCTGGCATTCAAACTTCTCCCGTATGCAGCTGAGGAAGAATCAAACGCTTGAGAGGTTCCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTGCCTCCCCTCTTCTTGAATGTGAAGCCAAATCATTTTGTGCTTGATATGTGTGCGGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCAACTAAAGCCGGATCTCTTCCTGATGGAATGGTGATAGCAAATGATCTTGATGTTCAAAGATGTAATCTTCTCATCCACCAAACAAAAAGGATGTGCACAGCCAACCTCATTGTCACTAATCATGAAGCTCAGAACTTTCCAGGCTGTCGTTTAGTCAGAAATCATGAATCATTGGAACCAGAACAGCATATTGGCCAACTTTTATTTGATTGCATTCTCTGCGATGTCCCGTGCAGTGGAGATGGAACCCTTCGCAAGGCACCTGATCTGTGGAGGAAATGGAATACTGGGATGGGAAATGGGCTTCATAGCCTACAAGTTCTAATAGCTATGCGAGGCTTATCTTTACTTAAAGTTGGCGGAAGAATGGTCTATTCAACCTGCTCAATGAATCCAATTGAGAATGAAGCTGTGGTTGCAGAGATTTTACGAAGGTGTGGAGGATCTGTTGAACTTGTTGATGTCTCAAATGAGTGCCCCCAACTTTTGCGCCGGCCAGGTCTCAAGAGATGGAAGATACGTGACAGGGGCTTATGGCTATCTTCCTATAAAGATGTTCCCATGTATCGAAGAAGTGCAGTTCTTCCCAGCATGTTTCCTTCAGGAAAAAACTATAAGGATCTTGTTGACAGTAATCACAAGATGGAGATGGGAGATGATATTGATAAGGGTGTTTGTGGAGACTCTGAAGATGGCAATCAAGCAGCAGAGAATCCTGTGACAGATAAGTTTACTAAGGAAGTTTCTGATTTACCACTAGAGCATTGCATGAGGATAGTGCCTCATGATCAAAACACTGGAGCTTTCTTTATTGCAGTACTGCAAAAGGTTTCTCCTCTTCCAGCAATTCCTATTCCAGATAAAACAAAAAATGAAATTGATAAGCAGCATGGAGAACCAGAGAACCAGGATATGGAGGATTCAAAAGTATTGCAGGTCGATTCATTAGAAAATACACATGAGGAAGCTTTGGAAGAGTTTAATATATTTGATAACAAACCCAACACAGAAGATTTGGAAGCTAGTCCTTCTGGTGCATGTTTAGAAGGTGATTCTGAGGAAGTGCAAAGGGCTCTTCAAACAGAAAGCATAGCAAAAATGACTCCAGGGAAAAGAAAGGTGCAGATTCAAGGCAAGTGGAGAGGCGTTGATCCTGTTTTCTTTTTCAAAGATGAAGACACTATTAACAGCATAAAGGATTTTTATGGTATCGATGAAAAGTTTCCATTGAATGGCCATCTTGTCACTAGAAACAATGAAAGAGGCCATGTGAAAAGAATTTATTATGTCAGCAAGTCAGTCAAAGATGTTCTTGAACTGAATTTCTCAGTTGGGCAGCAACTCAAAATAGCATCCCTTGGTCTGAAGATGTTTGAAAGACAGACATCAAGAGAAGGAATCTCTGCTCCTTGTGCTTTCCGAATATCATCTGAAGGATTGCCTCTTATTTTGCCATATATTACCAAGAGGATTCTTCGTGCATCTTCTGGGGACTTCAAGCATCTTCTGCAGTACAAAACAATAAAATTTGCAGATTTTGTCGATGCCCAGTTTGGCAAAAAGGCAGAAAACCTAACGACAGGCTATTGTGTGGTAGTTCTAAGTAAAGGGAAAAGAGAAGCTTCAGAAACCATTCAGGTGGACAAGTCTACCATAGCCATTGGATGTTGGAAAGGAAGGGCCAGTTTGAATGTGATGGTAACAGCAACGGACTGCCAAGAACTGCTCGAAAGACTTTTAGTGCGCTTTGATGCAGAACATGGTTCCTCTGTGCAAGAGAGCATGCCCTCCAATAATGCCGTTGATGAAGAACAAGTCCCTAACGGTTTAGATGACTCGGAAGCTCCTGGAGGCAACAATACCTAA 2487 0.4262 MGGRGKSRTQRKHFRQSRENVWKRSKPDPSPQDPDSTGNPNPTWSPFASQNSAFDEYYHEQGIVPPEDWDAFVAVLRTPLPASFRINACSQFSADLRSQLENDFVQTLQAEFVEGDKTEAIKPLPWYPENLAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLNVKPNHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQNFPGCRLVRNHESLEPEQHIGQLLFDCILCDVPCSGDGTLRKAPDLWRKWNTGMGNGLHSLQVLIAMRGLSLLKVGGRMVYSTCSMNPIENEAVVAEILRRCGGSVELVDVSNECPQLLRRPGLKRWKIRDRGLWLSSYKDVPMYRRSAVLPSMFPSGKNYKDLVDSNHKMEMGDDIDKGVCGDSEDGNQAAENPVTDKFTKEVSDLPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPAIPIPDKTKNEIDKQHGEPENQDMEDSKVLQVDSLENTHEEALEEFNIFDNKPNTEDLEASPSGACLEGDSEEVQRALQTESIAKMTPGKRKVQIQGKWRGVDPVFFFKDEDTINSIKDFYGIDEKFPLNGHLVTRNNERGHVKRIYYVSKSVKDVLELNFSVGQQLKIASLGLKMFERQTSREGISAPCAFRISSEGLPLILPYITKRILRASSGDFKHLLQYKTIKFADFVDAQFGKKAENLTTGYCVVVLSKGKREASETIQVDKSTIAIGCWKGRASLNVMVTATDCQELLERLLVRFDAEHGSSVQESMPSNNAVDEEQVPNGLDDSEAPGGNNT 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1322 828 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 10 800 IPR023267 GO:0001510
Lele24g1322 828 Pfam 16S rRNA methyltransferase RsmB/F 177 362 IPR001678 GO:0008168
Lele24g1322 828 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 49 484 IPR029063 -
Lele24g1322 828 PRINTS RNA (C5-cytosine) methyltransferase signature 187 197 IPR023267 GO:0001510
Lele24g1322 828 PRINTS RNA (C5-cytosine) methyltransferase signature 466 483 IPR023267 GO:0001510
Lele24g1322 828 PRINTS RNA (C5-cytosine) methyltransferase signature 327 343 IPR023267 GO:0001510
Lele24g1322 828 PRINTS RNA (C5-cytosine) methyltransferase signature 277 289 IPR023267 GO:0001510
Lele24g1322 828 Coils Coil 520 540 - -
Lele24g1322 828 MobiDBLite consensus disorder prediction 797 828 - -
Lele24g1322 828 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 72 484 IPR001678 GO:0008168
Lele24g1322 828 MobiDBLite consensus disorder prediction 797 811 - -
Lele24g1322 828 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 49 391 - -
Lele24g1322 828 MobiDBLite consensus disorder prediction 494 515 - -
Lele24g1322 828 MobiDBLite consensus disorder prediction 1 46 - -
Lele24g1322 828 Gene3D Vaccinia Virus protein VP39 48 394 IPR029063 -
Lele24g1322 828 MobiDBLite consensus disorder prediction 495 515 - -
Lele24g1322 828 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 133 154 IPR023270 GO:0016428
Lele24g1322 828 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 361 380 IPR023270 GO:0016428
Lele24g1322 828 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 655 667 IPR023270 GO:0016428
Lele24g1322 828 MobiDBLite consensus disorder prediction 14 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1322 Lele-ChrLele24 19285105 19292346 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1371 21 22182459 22187340 Lele24g1322 24 19285105 19292346 CCT
Lele22g1361 22 19424133 19429731 Lele24g1322 24 19285105 19292346 CCT
Lele23g0652 23 4984301 4989147 Lele24g1322 24 19285105 19292346 CCT
Lele24g1318 24 19226746 19235965 Lele24g1322 24 19285105 19292346 CCT
Lele24g1322 24 19285105 19292346 Lele24g1322 24 19285105 19292346 ECH
Lele21g1376 21 22242117 22256098 Lele24g1322 24 19285105 19292346 hybridization
Lele22g1366 22 19486207 19493515 Lele24g1322 24 19285105 19292346 hybridization