Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1318 ATGTCTGACAACGACCTTGTCTTCGAGACTTTCCGAGCTCTGGTGGAGAGCGCGGACCGCAAGTTCGCTAGGGTTCGCGACGTGCCAGCCTATGGGCGTGTTAGCCAGAACCACTTCTATCTGAAGGTTTTCAAGGCATATACGCGACTTTGGAAGTACCAGCAGGAGAACCGGTCCAAACTAGTTCAGTGCGGTCTAAAACGCTGGGAAATCGGCGATATCGCTAGCCGAATCGGGCAACTTTACTTCGGGCAGTATATGAGGACTAGTGAGTGCAGGTACTTGGTTGAAGCATATGTCTTCTATGAAGCGATACTCAACAGAAGATATTTTGAAGGATCCGAAGGTTCTTCGAAAGATCCGGGAATTAGGTTCAAGGAATTGAGATTTTATGCGCGGTTTTTGTTGGTGGCGGTGATTTTAAACAGAACGGAGATGGTCAAGCATCTTATGGACCGTTTCATGGCTTTACTTGACGATTGTAAGAGCAACTTCCGGGAAACTAACTTAAAGGAATGGAGGCAAGTGGTGCAAGAAATTGTCAGATTTACAAAGGCAGAGAATGGCTTTGCTATCAGGCCTTTGCGTTATTGTGCCATAACTGATACTCATCAGGCTTCTCTTCCATATGTAGCTCGTTTTCATGCAAAGAGGGTTTTAAAATTTCGAGATGCCTTGTTGACAAGCTATCATAGGAATGAGGTCAAATTCGCTGAGCTTACATTAGATTCCTACAGAATGCTGCAATGTTTAGAATGGGAGCCTAGTGGATCGTTCAACCAAAAACCTATTGTTAAACCGCTTGAGAATGGGGACTCCATCGATCATTCGGGAACTTCTGGGTTAATAAATATGAGCCTAGCTGCAGATATGACAGATCCAAATGTGCCTCCTAATCCAAGAAAGGCTGTTCTTTATCGTCCATCTGTAACCCATCTGATAGCAGTTATGGCGGCAATTTGCGAGGAACTGCCACCAGATAGTGTTGTGCTTGTATATCTATCAGCCTCAGGGAAGGCTAGTTATAATAATATCCATCAGTTGGAGAATTCTGGAGGGTCATCGAAACATTCAAGGCACAAAGTCCTCTCTCAGCCTTCCCAAGAGCAGAGCAGTGGATCTTCTGACTCTCAAATCAATGGCAAGAGAGAATCCAACTCCTATTACGACAACTATCTGTGGTTTGGTCCCAAGGGCATCGATGGTTCAAACAATCTTTACCCTGGCGATCTTATTCCTTTCACCCGCAAACCTGTTTTCTTCATTATTGATAGTGATAACAGCCATGCATTCAAGGTTTTATGTGGTGCCGAAAGGGGGGAGACAGCTGCTATGTTTCTTTCTCCTTTAATGCCAGTTTTCAAGAATCCATCTGATGTGAATTTACAGAATGGAAGCCAATTTACCTTCTTCCTGACTGCTCCTTTGTCAGCATTTTGCCAGATGGTTGGCCTGTCCCCCAGTGAGGTTGACAAGGAAGTCTATGACGAAGCGGAGAACATTCTTGCCAACGCCTTTGCTGAGTGGGAAATAATTCTGTGCTCATCAACTACTAGCTTGGATTTAGTCTGGGCTCAAATCATGACTGATCCATTTTTACGGCGGCTTATTTTAAGATTCATCTTCTGCCGGTCAGCAATCTCTTTTTACTGCCCGCCTGAGGAAAGAGAGCAGTATCTACCGCTTTGCTTGCCTCACCTGCCCACACCTGTTGCACCTGGTTCTGGAGCTGTTCGTACTGCCATCGTTCAAATTGCTACACACTTTGAAGTGGCTGACTCCTTTCACTTTATATTGAGCCGTTGGAAACTTTTGATTCTTCTCCCGCAGATTCGTCAAAAGAACAGAAGGAAGGAGCTTGCGTTGCACGAGATGGCCCGTACTAAGCAAACTGCTCGTAAGTCTACCGGTGGAAAGGCTCCCAGGAAGCAACTTGCCACCAAGGCTGCTCGTAAGTCTGCACCAACTACTGGTGGTGTCAAGAAGCCCCATCGTTATCGCCCTGGAACAGTTGCTCTTCGTGAGATTAGGAAATACCAGAAAAGTACTGAGCTTTTGATCAGGAAACTCCCCTTCCAGAGGCTTGTTCGTGAAATTGCTCAAGACTTTAAGACTGACCTTCGTTTCCAGAGCCATGCTGTGCTTGCATTGCAAGAAGCCGCTGAGGCATACCTAGTTGGACTATTTGAGGACACTAACCTCTGCGCCATCCATGCCAAACGAGTCACAATTATGCCCAAGGATATCCAGCTGGCTAGGAGGATTCGTGGGGAGCGTGCTTGA 2283 0.4608 MSDNDLVFETFRALVESADRKFARVRDVPAYGRVSQNHFYLKVFKAYTRLWKYQQENRSKLVQCGLKRWEIGDIASRIGQLYFGQYMRTSECRYLVEAYVFYEAILNRRYFEGSEGSSKDPGIRFKELRFYARFLLVAVILNRTEMVKHLMDRFMALLDDCKSNFRETNLKEWRQVVQEIVRFTKAENGFAIRPLRYCAITDTHQASLPYVARFHAKRVLKFRDALLTSYHRNEVKFAELTLDSYRMLQCLEWEPSGSFNQKPIVKPLENGDSIDHSGTSGLINMSLAADMTDPNVPPNPRKAVLYRPSVTHLIAVMAAICEELPPDSVVLVYLSASGKASYNNIHQLENSGGSSKHSRHKVLSQPSQEQSSGSSDSQINGKRESNSYYDNYLWFGPKGIDGSNNLYPGDLIPFTRKPVFFIIDSDNSHAFKVLCGAERGETAAMFLSPLMPVFKNPSDVNLQNGSQFTFFLTAPLSAFCQMVGLSPSEVDKEVYDEAENILANAFAEWEIILCSSTTSLDLVWAQIMTDPFLRRLILRFIFCRSAISFYCPPEEREQYLPLCLPHLPTPVAPGSGAVRTAIVQIATHFEVADSFHFILSRWKLLILLPQIRQKNRRKELALHEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1318 760 Pfam Protein SCAI 14 550 IPR022709 GO:0003714|GO:0006351
Lele24g1318 760 SUPERFAMILY Histone-fold 626 757 IPR009072 GO:0046982
Lele24g1318 760 SMART h35 658 760 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele24g1318 760 Gene3D Histone, subunit A 626 760 IPR009072 GO:0046982
Lele24g1318 760 FunFam Histone H3.3 677 760 - -
Lele24g1318 760 ProSitePatterns Histone H3 signature 2. 691 699 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele24g1318 760 MobiDBLite consensus disorder prediction 345 382 - -
Lele24g1318 760 PRINTS Histone H3 signature 627 641 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele24g1318 760 PRINTS Histone H3 signature 658 679 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele24g1318 760 PRINTS Histone H3 signature 738 759 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele24g1318 760 PRINTS Histone H3 signature 704 722 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele24g1318 760 PRINTS Histone H3 signature 722 738 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele24g1318 760 PRINTS Histone H3 signature 682 699 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele24g1318 760 PRINTS Histone H3 signature 641 655 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele24g1318 760 ProSitePatterns Histone H3 signature 1. 639 645 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele24g1318 760 MobiDBLite consensus disorder prediction 626 665 - -
Lele24g1318 760 PANTHER PROTEIN SCAI 4 614 - -
Lele24g1318 760 Pfam Core histone H2A/H2B/H3/H4 625 756 IPR007125 GO:0003677
Lele24g1318 760 FunFam Histone H3 626 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1318 Lele-ChrLele24 19226746 19235965 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1318 24 19226746 19235965 Lele21g1376 21 22242117 22256098 CCT
Lele24g1318 24 19226746 19235965 Lele22g1366 22 19486207 19493515 CCT
Lele24g1318 24 19226746 19235965 Lele23g0643 23 4908933 4913405 CCT
Lele24g1318 24 19226746 19235965 Lele24g1322 24 19285105 19292346 CCT
Lele24g1318 24 19226746 19235965 Lele24g1318 24 19226746 19235965 ECH
Lele21g1371 21 22182459 22187340 Lele24g1318 24 19226746 19235965 hybridization
Lele22g1361 22 19424133 19429731 Lele24g1318 24 19226746 19235965 hybridization