Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1376 ATGCATGCCAATATGCATGCATGCGTCAAATTGCATGATGTGGTTCGGGATGTAGCCTTGTGGATTGGAAAGAAAAGATGTCAAGAAGTTTTGGTGGACAGCAATGCGGTTTCAAACACATTGGTTAGCAACCATCAAAGTTTGAAAGATACAAAGGCACTGTCATTGTGGAATGTGGATGAGAATTTCAAGCTTTCTAATCAACTGGGTTGTCCGACACTTGAGATTCTGCTACTTCAACCTCATGGGTTCGTTGAAGATCTTCGAGCAATAGAAGCACTTAAAGTCTTGGCACTCATAACATATGGATTTACATGGAGCTTGCGTTTCATTTTTCGAAGTTTTTGCTCAGTCCCACGATCAATTGTATCATCAACAAATCTTAACACCCTATGTCTTAGAGGAAAAGTATTGCATGACATCTCTTTTTTGAGTGAACTCAAAGGATTGGAGATTCTTGACTTGCGTGATTCTTGTTTTCTTGAATTACCTGCTGGAATTGTAGACATGAAAATGCTGAAACTTTTGGATATGTTTGGTTGCAAAATTGATAAAAGCCCTTTAGAAGTAATTGGAAGATGTGAGCAACTTGAAGAATTATACTTTTATGATCACGAATCTGCCATCCCAGAAACATTCTGTCGTTCAAGGTTGAAGAGGTATGCTATCTGTGATTCCACAATTGTTTCTAAATACATGCCTCCTTTTGCAAAATATTTGGATGGTTGTGATGAAGGATTGAGATATTTATGTATACAAGGCTTCAAAGTCTCTGCTCTAAGTCTATCAATGAAAGATCTCATTCTTAGAGCGAACTGCCTTTGGCTAGAGAATTGTTGGTGGGAACATAAAGATATAAATTTTGAGATAACGCACTTGGGGGTTTCATGCTGTCTAGAGAAGAGATTCATCATTGATAACCTTCAAACACAACATGTCTTCTCGCACCTGATTATGTTAACATTGATTAAAATGAATAGTCTTGAACAAGTGTTCCAAGATTCATCTGTTAGCTACTCTCTCTGCGAGTTACAAGAGCTATGCATACAGAGTTGTCCGGAATTGAGAACTTGTATCTTCACCCATGCCACGGTTAATAGCCTACCAAAGTTGAGGAAACTTGAGATTGTGGATTGCAACAAAGTGAAATGGCTATTCTCTTATTCTCTGACTTTTCACTGTCCTTCACTAGGGGAATTGAAAATAAGCAAATGCTCTGAACTTGAGAGGCTTATTGCTGAAGAAGCTGCACATGAGGACCCACTACTTCATGATATACAAGATTGTCCATACAGGATTACGATATCAGATTGCAACAAACTGAGATGGTTGTTATCCTATTCTTTGGCATCTCATTGTCCTTCACTAGAGAATCTAAGCATAGACTGTTGCTCTCAATTTGAGAGGATCGTTGATAAAGAAGCTGCACATAGTGGGGAACGATTACTGCACCAAAGGGAGTCACTTGATGATATGCAAGATTATCCATACAAGATTACGATATCAGATTGCAACAAACTGAGATGGTTGTTATCTTATTCTTTGGCATCTCATTGTCCTTCACTAGAGAATCTAAGTATAGACTGTTGCTCTCAATTTGAGAGGATCGTTGATAAAGAAGCTGCACATAGTGGGGAACGATTACTGCACCAAAGGGAGTCACTTGATGATATGCAAGATTATCCATACGGAAATAAGAATGATAGAGCTTATGTGGGGTTTATTTTAAAAAGCTTCAACCAGTTGCAAAATCAGCAACCCTTGATCCTTTTTTTAAGATTGGAATATCTATCAATTACAAGCAATGGAAAGAAGAAAGGTATTTTTGAGGTCCAAGTCAAAAAAACAATAGAAGATGAAGAATCTATTAAGGCAAAAGAACCATTGAAACTGAATGCAGAACTGTATATATTAGGCTTACAAGATCTACCACAGTTGGAATATATTTAATGCCACAAAGTGAGAAGGGTGTTCTCATATTCTCTAGCATCTCATTGTCCTTCATTGGAAGAAATCGACATAAGGGATTGTGCTCAACTTGAGGGGGTTGTTCAAACTTATGAAAGTGAAGTAGCCGGTCGTGATGAAAATTTGTTTCCTAAACTGAATACGTTGAATCTCATAAGCTTGCCAAAGCTGAGAGAGATTTACCTAAGTTATGAATTCAACCTTGTATCTAATACTATGTTGATACGAGATTGTCCAAATATACGCAACATTCCATTAGAATGCAAGGCCTCATCAGGTACTATGGGCGGTCGCGGCAAGTCTAGCCCTCAGCGAAAGCATTTCCGGCAGAGCAGAGAAAATGTGTGGAAGCGTTCAAAACCCGATCCTTCTTCTCAAGATCCTGACTCCACTGACAATCCAAATCCTACTTGGACTCCCTTCGCCACTCAGAACTCTGCTTTTGATGACGGAAGAATGGTCTATTCAACCTGCTCAATGAATCCAATTGAGAATGAAGCTGTGGTCGCAGAGATGGAGATGGGAGATGATATTGATAAGGGTGTTTGTGGAAACTCTGAAGATGGCAATCAAGCGGCAGAGAATCCTGTGACAGATAAGTTTATTGAGGAAGTTTCTGATTTACCGCTAGAGCATTGCATGAGGATAGTTCCTCATGATCAAAACACTGGAGCTTTCTTTATTGCAGTACTGCAAAAGGTTTCTCCTCTTCCAGCAATTCCTATTTCAGAAAAAACAAAAAATGAAATTGATAAACAGCATGGAGAACCAGAGAACCAGGATATTGAGGGTTCAAAAGTATTGCAGGTTGATTCATTAGAAAATACACACGAGGAAGCTTTGGAAGAGGCTAATGTAATTGATAACAAACCCAACACTGAAGATTTGGAAGCTAGTCCTTCTGGTGCATTTTTAGAAGGGGATTCAGAGGAAGTGCAAAAGCCTCTTGAAAAAGAAAGCGTAGCAAAAATGACTCCAGGGAAAAGAAAGCTGCAGATTCAAGGGAAGTGGAGAGGCGTTGATCCTGTTTTCTTTTTCAAAGATGAAGACACTATTAATAGCATAAAGGATTTTTATGGTATCGATGAAAGGTTTCTATTCAATGGCCATCTTGTCACTAGAAACAATGAAAGAGGCCATGTGAAAAGAATTTACTATGTCAGCAAGTCAGTCAAAGAAGTTATTGAACTGAATTTCTCAGTTGGGCAGCAACTCAAAATAGCATCCCTTGGTCTGAAGATGTTTGTGAGGAAAAGAGAAGCATCAGAATCCATTCAGGTGGACGAGTCTACCATAGCCATTGGATGCTGGAAAGGAAGGGCCAGTTTGAATGTGATGGTAACGGCAACGGACTGCCGAGAACTGCTAGAAAGACTTTTAGTGCGCTTTGACGTAGAACATGGTCCCTCTGTGCAAGAGAACATGCCCTCCAATAATGCCGTTGATGAAGAACAAGGCCCTAACGGTTTAGATGACTCGGAAGCTCCTGGAGGCGACAATAACTAA 3474 0.3946 MHANMHACVKLHDVVRDVALWIGKKRCQEVLVDSNAVSNTLVSNHQSLKDTKALSLWNVDENFKLSNQLGCPTLEILLLQPHGFVEDLRAIEALKVLALITYGFTWSLRFIFRSFCSVPRSIVSSTNLNTLCLRGKVLHDISFLSELKGLEILDLRDSCFLELPAGIVDMKMLKLLDMFGCKIDKSPLEVIGRCEQLEELYFYDHESAIPETFCRSRLKRYAICDSTIVSKYMPPFAKYLDGCDEGLRYLCIQGFKVSALSLSMKDLILRANCLWLENCWWEHKDINFEITHLGVSCCLEKRFIIDNLQTQHVFSHLIMLTLIKMNSLEQVFQDSSVSYSLCELQELCIQSCPELRTCIFTHATVNSLPKLRKLEIVDCNKVKWLFSYSLTFHCPSLGELKISKCSELERLIAEEAAHEDPLLHDIQDCPYRITISDCNKLRWLLSYSLASHCPSLENLSIDCCSQFERIVDKEAAHSGERLLHQRESLDDMQDYPYKITISDCNKLRWLLSYSLASHCPSLENLSIDCCSQFERIVDKEAAHSGERLLHQRESLDDMQDYPYGNKNDRAYVGFILKSFNQLQNQQPLILFLRLEYLSITSNGKKKGIFEVQVKKTIEDEESIKAKEPLKLNAELYILGLQDLPQLEYIXCHKVRRVFSYSLASHCPSLEEIDIRDCAQLEGVVQTYESEVAGRDENLFPKLNTLNLISLPKLREIYLSYEFNLVSNTMLIRDCPNIRNIPLECKASSGTMGGRGKSSPQRKHFRQSRENVWKRSKPDPSSQDPDSTDNPNPTWTPFATQNSAFDDGRMVYSTCSMNPIENEAVVAEMEMGDDIDKGVCGNSEDGNQAAENPVTDKFIEEVSDLPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPAIPISEKTKNEIDKQHGEPENQDIEGSKVLQVDSLENTHEEALEEANVIDNKPNTEDLEASPSGAFLEGDSEEVQKPLEKESVAKMTPGKRKLQIQGKWRGVDPVFFFKDEDTINSIKDFYGIDERFLFNGHLVTRNNERGHVKRIYYVSKSVKEVIELNFSVGQQLKIASLGLKMFVRKREASESIQVDESTIAIGCWKGRASLNVMVTATDCRELLERLLVRFDVEHGPSVQENMPSNNAVDEEQGPNGLDDSEAPGGDNN 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1376 1157 MobiDBLite consensus disorder prediction 1126 1157 - -
Lele21g1376 1157 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 805 890 IPR029063 -
Lele21g1376 1157 MobiDBLite consensus disorder prediction 748 801 - -
Lele21g1376 1157 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 806 1079 IPR023267 GO:0001510
Lele21g1376 1157 Gene3D Vaccinia Virus protein VP39 801 978 IPR029063 -
Lele21g1376 1157 Coils Coil 926 946 - -
Lele21g1376 1157 Gene3D Ribonuclease Inhibitor 630 764 IPR032675 -
Lele21g1376 1157 Gene3D Ribonuclease Inhibitor 289 603 IPR032675 -
Lele21g1376 1157 SUPERFAMILY L domain-like 11 471 - -
Lele21g1376 1157 MobiDBLite consensus disorder prediction 762 781 - -
Lele21g1376 1157 Gene3D Ribonuclease Inhibitor 16 220 IPR032675 -
Lele21g1376 1157 MobiDBLite consensus disorder prediction 782 801 - -
Lele21g1376 1157 Pfam 16S rRNA methyltransferase RsmB/F 805 888 IPR001678 GO:0008168
Lele21g1376 1157 PRINTS RNA (C5-cytosine) methyltransferase signature 806 822 IPR023267 GO:0001510
Lele21g1376 1157 PRINTS RNA (C5-cytosine) methyltransferase signature 872 889 IPR023267 GO:0001510
Lele21g1376 1157 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 807 890 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1376 Lele-ChrLele21 22242117 22256098 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1371 21 22182459 22187340 Lele21g1376 21 22242117 22256098 CCT
Lele22g1361 22 19424133 19429731 Lele21g1376 21 22242117 22256098 CCT
Lele23g0652 23 4984301 4989147 Lele21g1376 21 22242117 22256098 CCT
Lele24g1318 24 19226746 19235965 Lele21g1376 21 22242117 22256098 CCT
Lele21g1376 21 22242117 22256098 Lele21g1376 21 22242117 22256098 ECH
Lele21g1376 21 22242117 22256098 Lele23g0643 23 4908933 4913405 hybridization
Lele21g1376 21 22242117 22256098 Lele24g1322 24 19285105 19292346 hybridization