Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0191 ATGGGGAAGCTCCGCAAAAGGAAGCAGCCTGAGGGTGATCGAGAGTCAAGGTCCCGCACAAAATCAACGGATGATGCTGTGAAATTGGCACAGGACGACGACACTGGGTTACCCGCCCAAGAAGAGTGTTCTGGACGGTTTGGTTCGGACCTTGCTCTTGCAGAATACTACCGAGGCAAATGCTTCGCTTCCCTCAAATATGCCTTTCCCACCTGGGAAGATCTGACTTTATATTCTGAGTCTGAGCTTCCACAAGGAAAATCCTCCTCCTTTAGTCCCCTGTATCCACACCTTTCATTGTTCTCAGTGCTGGCGCCAAGGATGTGGAGGATGCCATTCGGTGTGGTGGTTTGGCTCCAACTAAGTCTTCTTGTATTAAGTTGCTTGCTTGAGAGAAGTGGAAAATTATGCTTGGAGTATTTGAGAGACTTGTCTCTTGATGAAATTAAGTCTGAGCTATCTCTTTTCAAAGGAATTGGTCACAAGACAGTATCTTGTGTCTTGATGTTCAATCTTCAGCGAGATGATTTTCCTGTGGACACACATGTAAGTATGATTTCCTCTTCCTATTATCAGTATCAGAAAGAAAGATATTTGAGATTGCAAAAACCATTGGGTGGGTACCAGCTGTTGCGGACAGAAACAAAGACCTATCTTGATCTAAACCGCCGGATCCCAAAGGAACTCATGTTTGACTTCAACTGTCTTCTGTATACACATGGTAATGCGGCATTTAAGATGTTTGTTTGGTCTACTAGGTGTTTTGTGAACAACATTGCTAGTAGATTTCTAGATTGTCCTCCCTCCAGGTTCTCCGCCATAGCAAAATCCGCTTCTTCCTCTTCCTGCAACCTTCTTGAACACTTGCCTCAATACTACAATGGGTCAGCCCTTACACTTATTGAATCATTGTCTAGCCTGGTTATCATGGGCAACGATACTGAATTCAAGAGGGCAGCGCTCTGGCTTTCTGAAAATCTAACATTTGATGTTGATGCACGAATAAATCTTTTTGAGTGCAACATTAGAGTTCTTGGAGGACTTGTCTCTGCTCATCTTCTTGCATCTGATTCTGCAAATGATTTGTTTCAAGGAGCCTACAAAAATCAGCTGCTAGTACTGGCTGAAGATTTAGGGAACCGCTTCCTACCAGCATTTAATACACCCACGGGATTGCCATATGCATGGATCAACTTAAAGGCTCACCCTGAATTGGCATATGCTTTATCTGTCAGTTCATGGGAATTTCCAATGTATCAGCTGTGCCATGAAGCTGATATGAGGACACGAAGAGCAACTTATAGGCAACTTATAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGCATATCCATGGTATATTGAAGTGGGTGAATCGATAATTAATTCCCTCAACACATACACTAGAGTTGAAGGTGGATTTGCAAGCATCAGGGATGTGAAAACAATGGAGCTGGAAGATCATCAACAAGTTTTTTCCATGCTGAAACTGACCACAGGTGTTTCGCGGGTGAAGATTGTGGAGTTGACTCCACAACATGCAGAAGGCCTTGTAGTATGGCTGGTTATTGTGGGTTGTGGCTCTCCATGTGATTTTCATTTCACACACATTTCTTTTACCCGCTTAACGTGTTGA 1635 0.4367 MGKLRKRKQPEGDRESRSRTKSTDDAVKLAQDDDTGLPAQEECSGRFGSDLALAEYYRGKCFASLKYAFPTWEDLTLYSESELPQGKSSSFSPLYPHLSLFSVLAPRMWRMPFGVVVWLQLSLLVLSCLLERSGKLCLEYLRDLSLDEIKSELSLFKGIGHKTVSCVLMFNLQRDDFPVDTHVSMISSSYYQYQKERYLRLQKPLGGYQLLRTETKTYLDLNRRIPKELMFDFNCLLYTHGNAAFKMFVWSTRCFVNNIASRFLDCPPSRFSAIAKSASSSSCNLLEHLPQYYNGSALTLIESLSSLVIMGNDTEFKRAALWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSANDLFQGAYKNQLLVLAEDLGNRFLPAFNTPTGLPYAWINLKAHPELAYALSVSSWEFPMYQLCHEADMRTRRATYRQLISLQAFWPGLQAYPWYIEVGESIINSLNTYTRVEGGFASIRDVKTMELEDHQQVFSMLKLTTGVSRVKIVELTPQHAEGLVVWLVIVGCGSPCDFHFTHISFTRLTC 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0191 544 Gene3D Hypothetical protein; domain 2 123 174 - -
Lele23g0191 544 PRINTS Glycosyl hydrolase family 47 signature 297 311 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele23g0191 544 PRINTS Glycosyl hydrolase family 47 signature 384 403 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele23g0191 544 PRINTS Glycosyl hydrolase family 47 signature 334 352 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele23g0191 544 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 451 492 IPR044674 GO:0004571|GO:1904380|GO:1904382
Lele23g0191 544 SUPERFAMILY Seven-hairpin glycosidases 291 493 IPR036026 GO:0004571|GO:0005509|GO:0016020
Lele23g0191 544 MobiDBLite consensus disorder prediction 1 41 - -
Lele23g0191 544 Gene3D - 446 496 IPR012341 GO:0005975
Lele23g0191 544 Gene3D - 279 421 IPR012341 GO:0005975
Lele23g0191 544 MobiDBLite consensus disorder prediction 1 31 - -
Lele23g0191 544 Pfam Glycosyl hydrolase family 47 292 403 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele23g0191 544 SUPERFAMILY DNA-glycosylase 132 246 IPR011257 GO:0003824|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0191 Lele-ChrLele23 1240113 1249020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0191 451 492 Glycoside Hydrolase AT1G27520 69.048 1.93e-13 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0191 23 1240113 1249020 Lele17g1016 17 20877324 20881506 CCT
Lele23g0191 23 1240113 1249020 Lele18g0522 18 3079746 3084247 CCT
Lele23g0191 23 1240113 1249020 Lele19g0540 19 3127059 3131830 CCT
Lele23g0191 23 1240113 1249020 Lele20g0911 20 15446561 15451025 CCT
Lele23g0191 23 1240113 1249020 Lele23g0191 23 1240113 1249020 ECH
Lele21g1817 21 25774374 25776213 Lele23g0191 23 1240113 1249020 hybridization
Lele22g1793 22 23086584 23091140 Lele23g0191 23 1240113 1249020 hybridization