Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1817 ATGCCGAGCCGTCCGAGACACTTTATTGGCCCTACACGGTTTTCTCCAAGGTTCGCCAAGTACCGCACAAAATCAACGGACGATGTACTGTGCCTTCTGGGGTTTATCGTCTGTCACTCAGTTGAAATGATTGGTTCAATAATCTTCACCAATCCCCAGCTCTCGTGGTCACTCTACGAGATGCTTTCGATGACATGTGTCCTAGTTATCATGGGCAACGATACTGAATTCAAGAGGGCAGTGCTCTGGCTTTCTGAAAATCTAATATTTGATGTTGATGCACGAATAAATCTTGAGTGCAACATTAGAGTTCTTGGAGGACTTGTCTTTGTTCATCTTCTTGCATCTGATTCTGCAAATGATTTGTTTAAAGGAGCCTACAAAAATCAGCTGCTAGTACTGGCTGAAGATTTAGGGAACCGCTTCCTACCAGCATTTAATACACCCACGGGATTGCCATATGCATGGATCAACTTAAAGTATTTCATGAAACATGCTAAAGTCTTGCATTCTCCGAATTTATAA 525 0.4248 MPSRPRHFIGPTRFSPRFAKYRTKSTDDVLCLLGFIVCHSVEMIGSIIFTNPQLSWSLYEMLSMTCVLVIMGNDTEFKRAVLWLSENLIFDVDARINLECNIRVLGGLVFVHLLASDSANDLFKGAYKNQLLVLAEDLGNRFLPAFNTPTGLPYAWINLKYFMKHAKVLHSPNL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1817 174 SUPERFAMILY Seven-hairpin glycosidases 55 163 IPR036026 GO:0004571|GO:0005509|GO:0016020
Lele21g1817 174 Pfam Glycosyl hydrolase family 47 67 161 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele21g1817 174 PRINTS Glycosyl hydrolase family 47 signature 94 112 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele21g1817 174 PRINTS Glycosyl hydrolase family 47 signature 144 163 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele21g1817 174 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 67 165 IPR044674 GO:0004571|GO:1904380|GO:1904382
Lele21g1817 174 Gene3D - 41 172 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1817 Lele-ChrLele21 25774374 25776213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1817 68 160 Glycoside Hydrolase AT1G27520 74.468 2.57e-42 146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1817 21 25774374 25776213 Lele17g1016 17 20877324 20881506 CCT
Lele21g1817 21 25774374 25776213 Lele18g0522 18 3079746 3084247 CCT
Lele21g1817 21 25774374 25776213 Lele19g0540 19 3127059 3131830 CCT
Lele21g1817 21 25774374 25776213 Lele20g0911 20 15446561 15451025 CCT
Lele21g1817 21 25774374 25776213 Lele21g1817 21 25774374 25776213 ECH
Lele21g1817 21 25774374 25776213 Lele23g0191 23 1240113 1249020 hybridization