Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0776 ATGAAATTCGGTAAGAGTCTTAGCAACCAGATCGAGAAAACCCTTCCTGAGTGGCGGGACAAGTTCCTCTCCTACAAGGAGCTCAAGAAGAAGTTGAAGCAGTTGGAGCCTGCCGCTAAGGTTAGCGACGATGGAGGCTCCGACAGGGCCTCCAAACGCCAACGGCTCGACGCCGCCGATTCCAAAGATGGCGTGTCCAAGGAGGAGTGCGACTTCAGGAACTTGCTGGAGAACGAACTCGAAAAATTCAATAACTTCTTCGTTGAGAAGGAGGAAGAGTACATTATCAAATTGAAGGAGTTACAAGACAGGGTGGCGAAAGTAAAGTATTCTAATGAAGAACTACTGAAAATTCGCAAAGAAATTGTTGATTTCCATGGAGAGATGGTCTTGCTGGAAAACTACAGTGCCCTTAACTATACAGGACTAGTGAAAATACTTAAAAAGTATGATAAGAGAACTGGGGCTCTCATTCGCTTGCCATTTATTCAGAAGGTATTACAACAGCCATTTTTCACCACTGACCTTCTCTACAAGCTAGTTAAGGAATGCGAGTCGATGCTGGATCGCCTCTTCCCTGCAAATGAACCTGCAGCTTCTGGTGAGGGAACTTCACAAGCAGAAGGGTGTGATCCTTCAACTTCAACTACGACTGAGAGTAACGGTCTGCTGATACCGAAGGAACTGTCCGAGATCGAGTACATGGAGAGCCTCTACATGAAGAGTACCATATCAGCGTTGCATGTTTTACAGGAGATTAGAAGTGGAAGCTCTACAGTTAGCGTGTTTTCACTGCCACCCCTGCAAATGAGTGAATTGGAAGAAAAATGGAAGAAAATACCAGTTCTGGAACAAACCGCCAAGTAA 867 0.4544 MKFGKSLSNQIEKTLPEWRDKFLSYKELKKKLKQLEPAAKVSDDGGSDRASKRQRLDAADSKDGVSKEECDFRNLLENELEKFNNFFVEKEEEYIIKLKELQDRVAKVKYSNEELLKIRKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQQPFFTTDLLYKLVKECESMLDRLFPANEPAASGEGTSQAEGCDPSTSTTTESNGLLIPKELSEIEYMESLYMKSTISALHVLQEIRSGSSTVSVFSLPPLQMSELEEKWKKIPVLEQTAK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0776 288 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 274 IPR031142 GO:0016036
Lele19g0776 288 Coils Coil 98 118 - -
Lele19g0776 288 MobiDBLite consensus disorder prediction 35 62 - -
Lele19g0776 288 Pfam SPX domain 107 166 IPR004331 -
Lele19g0776 288 Pfam SPX domain 1 44 IPR004331 -
Lele19g0776 288 CDD SPX_AtSPX1_like 2 153 - -
Lele19g0776 288 MobiDBLite consensus disorder prediction 199 222 - -
Lele19g0776 288 ProSiteProfiles SPX domain profile. 1 164 IPR004331 -
Lele19g0776 288 Coils Coil 73 93 - -
Lele19g0776 288 MobiDBLite consensus disorder prediction 195 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0776 Lele-ChrLele19 4563387 4565463 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1170 21 9492976 9495510 Lele19g0776 19 4563387 4565463 CCT
Lele22g1175 22 9336903 9340410 Lele19g0776 19 4563387 4565463 CCT
Lele23g0873 23 13834145 13836672 Lele19g0776 19 4563387 4565463 CCT
Lele24g1148 24 9857246 9863283 Lele19g0776 19 4563387 4565463 CCT
Lele17g0789 17 19451937 19454039 Lele19g0776 19 4563387 4565463 hybridization
Lele18g0733 18 4478102 4481039 Lele19g0776 19 4563387 4565463 hybridization