Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0733 ATGAAATTCGGTAAGAGTCTTAGCAACCAGATCGAGAAAACCTTGCCTGAGTGGCGGGACAAGTTCCTCTCCTACAAGGAGCTCAAGAAGAAGTTGAACCAGTTGGAGCCTGCCGCTAAGGTTAGCGACGATGGCGGCTCCGACAGGGCCGCCAAACGCCAACGTGTAGACGCCGCCGATTCCAAGGATGGCGTGTCCCAGGAGGAGTGTGACTTCAGGAACTTGTTGGAGAACGAACTCGAGAAATTCAATAACTTCTTCGCTGAGAAGGAGGAAGAGTACATTATCAAATTGAAGGAGTTACAAGACAGGGTGGCGAAAGTAAAGGATTCTAATGAAGAGCTACTGAAAATTCGGAAAGAAATTGTTGATTTCCATGGAGAGATGGTCTTACTGGAAAACTACAGTGCCCTTAACTATACAGGACTAGTGAAAATACTAAAGAAGTATGATAAGAGAACTGGGGCTCTCATTCGTTTGCCATTCATTCAGAAGGTATTGCAACAGCCATTTTTCACCACTGACCTCCTCTACAAGCTAGTTAAAGAATGCGAGTCGATGCTGGATCGCCTCTTCCCTGCTAATGAACCTGCAGCTTCTGTTGAGGGAACTTCACAAGCAGAAGGGTGTGATCCTTCAACTTCAACTACGACCCAGAGTAACGGTCTGCTGATACCGAAGGAACTGTCAGAGATTGAGTACATGGAGAGCCTCTATATGAAGAGCACCATATCAGCATTGCATGTTTTGCAGGATATTAGAAGTGGAAGCTCTACAGTTAGCGTGTTTTCACTGCCACCCCTGCAAATGAGTGGGTTGGAAGAAACATGGAAGAAAATACCAGTTCTGGAACAAACGGCCAATGAAGACTTGATGATGCAAAAAGGCAGAGTGAGGCTACTGGCAGTGGCTCTGTTGTTGGCAGCTTGTGATGCTGTCTCCTCGGGAAGATATTCTAACCCATCTCACAAGATCATGATAACACTTGAAACATGGCAGAATCATGCTCCATGTTGCCCAGTGTCCGTCTAA 1032 0.4622 MKFGKSLSNQIEKTLPEWRDKFLSYKELKKKLNQLEPAAKVSDDGGSDRAAKRQRVDAADSKDGVSQEECDFRNLLENELEKFNNFFAEKEEEYIIKLKELQDRVAKVKDSNEELLKIRKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQQPFFTTDLLYKLVKECESMLDRLFPANEPAASVEGTSQAEGCDPSTSTTTQSNGLLIPKELSEIEYMESLYMKSTISALHVLQDIRSGSSTVSVFSLPPLQMSGLEETWKKIPVLEQTANEDLMMQKGRVRLLAVALLLAACDAVSSGRYSNPSHKIMITLETWQNHAPCCPVSV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0733 343 Coils Coil 73 118 - -
Lele18g0733 343 Pfam SPX domain 1 40 IPR004331 -
Lele18g0733 343 Pfam SPX domain 117 166 IPR004331 -
Lele18g0733 343 MobiDBLite consensus disorder prediction 200 220 - -
Lele18g0733 343 CDD SPX_AtSPX1_like 2 153 - -
Lele18g0733 343 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 274 IPR031142 GO:0016036
Lele18g0733 343 MobiDBLite consensus disorder prediction 36 63 - -
Lele18g0733 343 ProSiteProfiles SPX domain profile. 1 164 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0733 Lele-ChrLele18 4478102 4481039 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1170 21 9492976 9495510 Lele18g0733 18 4478102 4481039 CCT
Lele22g1175 22 9336903 9340410 Lele18g0733 18 4478102 4481039 CCT
Lele23g0873 23 13834145 13836672 Lele18g0733 18 4478102 4481039 CCT
Lele24g1148 24 9857246 9863283 Lele18g0733 18 4478102 4481039 CCT
Lele18g0733 18 4478102 4481039 Lele19g0776 19 4563387 4565463 hybridization
Lele18g0733 18 4478102 4481039 Lele20g0683 20 14014090 14017070 hybridization