Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0519 ATGTGTTTCGACAATATGCTGCTAGAAATCTGTCACAATGGGCATAGTCCACGGTGGGAAGTTGATGAGATTGGAACTTCAGCTTCCGACAAATCCGTTAAGCAAGAGGGAAGCGATGAATCAGATCATATGAAGGTCGAGAATTCGGTCTGGGAGACTGCGACCAATGAAGGATCAACGGTTTCAGATTGCGAAAGTGCTGTTTCTGGAAGTGATCATGTGCAGCACCAGATGTTCGGTGAAGGTTTCCTTAGACTTGCTGAAGGAGACAGGGTTCATGATCTCATTCAAGGAAGATTCATTCTGGGTTTGGGGAAGCTTGGGGGGCACACGAAGGTCGTTGCAGTTCACAGGAATGATTGTTCTAGCGTTATGGCGCAAGCTCGAATGGAATCATTTCGGGTTTATATGCGAGCCGAGGAGAAGCGTCGTGGTAATGCCAATGTGAAGTATGCGTGGTATGGGGCTTCTGGCAAGGAAGAGATACGAGAGATTATTTCTCACGGTTTCTGTAATGGCGGTAAAACTCAGAATAATGGACATTTTGGTTGCGGGTTATCTCTCTCTTCAGATGATTCTCCTATGGAAAGTTTGAAAAGCTCTATTGTTGACAAAGACGGTCTAAGACACTTATTACTCTGTCGCGTTATTCTGGGGAGGCAGGAGCTCGTGCTTCCTGGTTCTGATCAATGTCTTCCGAGTTCTGAAGAATATGACTCAGGGGTGGACAGCCTTTCAGCTCCCAAGAAGTATATCATTTGGTGTACCCGGATGAACACTCATATTTTTCCGGAATATGTTATAAGTTTCAAAGTTCCTAGCACGAAAGGGCTGGTGAAGTTTGAAGAAACTTTAAGAAAACCATCTTCTCCTTGGATTCCATTTCCAAGTCTAATTTCTGCGCTCTCCAAGTTTTTGCCTCCATCAACTATTACCTTGATCTCCAAGTTCCACAAAGAACACAAAGAAAAGAAGATTTCACGGAAAGAAATCATACAAAAATTAAGACAAATAGTAGGAGACGAGTTGTTGATTACAGTCATCAAATCTTTCATGGAAAGGTTGAATATGTATTTGTGCTTCAGAAAACGTGCAAGCGTTCGGCTAAGTCGGAATGGAATGATATCATTGAGGAACAAGGGAAAAAGCCGTATGGACATCCTTGAAATAGCTTTCAGTGTGGTTTCTTCTCTGAAATGTAAAGTCCACCCCTTTTTTGTTCATGTTCAGATGGGGTTTTCTTCTGACAAGACTTCATCTTTAGCCAAGGCCACAGACTCAGCCCATAGCTCACCAAGTTTCCTGTGTGCGTCTGTTTTTATTTTCCGTCTCAAGGGTTGA 1341 0.4318 MCFDNMLLEICHNGHSPRWEVDEIGTSASDKSVKQEGSDESDHMKVENSVWETATNEGSTVSDCESAVSGSDHVQHQMFGEGFLRLAEGDRVHDLIQGRFILGLGKLGGHTKVVAVHRNDCSSVMAQARMESFRVYMRAEEKRRGNANVKYAWYGASGKEEIREIISHGFCNGGKTQNNGHFGCGLSLSSDDSPMESLKSSIVDKDGLRHLLLCRVILGRQELVLPGSDQCLPSSEEYDSGVDSLSAPKKYIIWCTRMNTHIFPEYVISFKVPSTKGLVKFEETLRKPSSPWIPFPSLISALSKFLPPSTITLISKFHKEHKEKKISRKEIIQKLRQIVGDELLITVIKSFMERLNMYLCFRKRASVRLSRNGMISLRNKGKSRMDILEIAFSVVSSLKCKVHPFFVHVQMGFSSDKTSSLAKATDSAHSSPSFLCASVFIFRLKG 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0519 446 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 30 351 IPR044964 -
Lele19g0519 446 ProSiteProfiles PARP catalytic domain profile. 70 290 IPR012317 GO:0003950
Lele19g0519 446 Pfam RCD1-SRO-TAF4 (RST) plant domain 287 351 IPR022003 -
Lele19g0519 446 SUPERFAMILY ADP-ribosylation 85 276 - -
Lele19g0519 446 MobiDBLite consensus disorder prediction 23 44 - -
Lele19g0519 446 Gene3D - 83 272 - -
Lele19g0519 446 ProSiteProfiles RST domain profile. 286 357 IPR022003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0519 Lele-ChrLele19 3009877 3012609 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1792 21 25581416 25583909 Lele19g0519 19 3009877 3012609 CCT
Lele22g1769 22 22911686 22914542 Lele19g0519 19 3009877 3012609 CCT
Lele23g0216 23 1449554 1452040 Lele19g0519 19 3009877 3012609 CCT
Lele24g1729 24 22561475 22564313 Lele19g0519 19 3009877 3012609 CCT
Lele17g1038 17 21001136 21003319 Lele19g0519 19 3009877 3012609 hybridization
Lele18g0496 18 2938540 2942307 Lele19g0519 19 3009877 3012609 hybridization