Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0494 ATGGATATGAAGGGATATTCAGGTTTCAAGACAAATTATAGGAATGAGCCATTTCTTTCAGGTCATCAACAACACCGCACAAGAAGAAGCCGACAACGCCAATGCACACAAGAAAATCATGTTGCCTCACTACAAACAAGCCCACCGAATCATTCTCTGAAAGTGGCGTCTTCTTCTTCTGCGACTAGCCAAAATACTACAAGCCTACCTCTGTTTTCTGCTGCTTTTGTTGCTTTCCTTCTGCTTCTTTCTTTTATCACTCCTGTTCTGTCTCACTCTTCACCAACCAATCAAACTTTCCGACCTGGTCCTCAGTTGCTCAAGCTAAGGAGAATCAGAGCTCTCCTTAAGAAAATCAACAAGCCTTCTGTCAAGACAATTAAGAGCCTAGACGGGGATTTGATAGATTGTGTTTTATCGCATCAGCAGCCAGCTTTTGACCATCATGAGCTTAAAGGGAACAAGCCATTGGATCCACCAGAAAGGCCAAAGGGCCACAAAGACAATGGAGAAGAAGAAGTTATCGAGAGCTTTCAGCTATGGACTGATTCTGGGGAAACATGCCCAGAAGGAACAGTTCCCATCAGAAGAACAACAGAACAAGACATCCTAAGAGCAAGTTCCATTCGTAGATTCGGAAGAAAACCAAGAAGCGTGCGAAGAGACTCAACTGGCTCTGGTCATGAGCATGCAGTGGTTTTTGTGAACGGAGATCAATATTATGGAGCAAAAGCAGGCATCAACGTGTGGACACCCAAAGTAACTGACCAATACGAATTTAGCTTATCACAAATATGGGTCATTGCAGGCTCATTTGGTCATGACTTGAATACCATCGAAGCTGGTTGGCAGGTGAGCCCAGAACTGTATGGGGACAACTATCCGAGGTTCTTCACTTATTGGACTACAGATGCATATCAAGCCACTGGATGCTACAACTTGCTGTGTTCAGGTTTTGTGCAGACCAACAATAGAATAGCCATAGGAGCAGCAATCTCTCCAAGATCAGCTTACAACGGAAGACAGTTTGATATTGGATTAATGGTCTGGAAGGATCCGAAACACGGGCACTGGTGGCTGGAGTTCGGGTCGGGTCTGCTGGTGGGTTACTGGCCAGCGTACTTGTTCAGTCACCTGAGAAGCCACGCGAGCATGGTGCAATTCGGAGGAGAGATAGTGAACACGCGATCGAGAGGGTATCACACCGGCACTCAGATGGGGAGCGGGCATTTCGCCGGGGAAGGATTCAGAAAAGCCGCTTATTTCAGGAACTTGCAGGTCGTCGATTGGGACAACAATTTGCTTCCGCTCACCAACATTCACCAGCTCGCCGATCATTCCAATTGCTACGATATCAGACAGGGCCGTAATAATGTCTGGGGAACTTATTTCTATTACGGTGGCCCTGGTAGAAACATCCGATGCCCGTGA 1431 0.4661 MDMKGYSGFKTNYRNEPFLSGHQQHRTRRSRQRQCTQENHVASLQTSPPNHSLKVASSSSATSQNTTSLPLFSAAFVAFLLLLSFITPVLSHSSPTNQTFRPGPQLLKLRRIRALLKKINKPSVKTIKSLDGDLIDCVLSHQQPAFDHHELKGNKPLDPPERPKGHKDNGEEEVIESFQLWTDSGETCPEGTVPIRRTTEQDILRASSIRRFGRKPRSVRRDSTGSGHEHAVVFVNGDQYYGAKAGINVWTPKVTDQYEFSLSQIWVIAGSFGHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPRSAYNGRQFDIGLMVWKDPKHGHWWLEFGSGLLVGYWPAYLFSHLRSHASMVQFGGEIVNTRSRGYHTGTQMGSGHFAGEGFRKAAYFRNLQVVDWDNNLLPLTNIHQLADHSNCYDIRQGRNNVWGTYFYYGGPGRNIRCP 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0494 476 MobiDBLite consensus disorder prediction 148 170 - -
Lele19g0494 476 Pfam Neprosin activation peptide 126 233 IPR025521 -
Lele19g0494 476 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 112 472 - -
Lele19g0494 476 MobiDBLite consensus disorder prediction 36 59 - -
Lele19g0494 476 FunFam Putative carboxyl-terminal proteinase 249 368 - -
Lele19g0494 476 Gene3D - 251 363 - -
Lele19g0494 476 Pfam Neprosin 258 469 IPR004314 -
Lele19g0494 476 MobiDBLite consensus disorder prediction 13 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0494 Lele-ChrLele19 2808340 2811216 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1746 22 22765429 22768451 Lele19g0494 19 2808340 2811216 CCT
Lele23g0238 23 1637676 1638329 Lele19g0494 19 2808340 2811216 CCT
Lele24g1711 24 22417808 22420664 Lele19g0494 19 2808340 2811216 CCT
Lele17g1066 17 21187144 21190000 Lele19g0494 19 2808340 2811216 hybridization
Lele18g0475 18 2783042 2786008 Lele19g0494 19 2808340 2811216 hybridization